GBrowse Details

Vigan.11G053900.01

Basic Information:
Name: Vigan.11G053900.01
Multiple alignment
Variant Information
Position: Chr11:6118185..6129890 (+ strand)
Length: 11706
Functional Information:
Description: Similar to Phosphorylase. [I6LKQ6, Vigna radiata]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: phosphorylase activity (GO:0004645)
Molecular Function: glycogen phosphorylase activity (GO:0008184)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Glycosyl transferase, family 35 (IPR000811)
Glycogen/starch/alpha-glucan phosphorylase (IPR011833)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:192.34,64.35,27.28,33.91,35.97,227.91,16.61,53.41
Arabidopsis thaliana homolog: AT3G29320.1, AT3G46970.1
Automatic updates:
Name: NM_001317270 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic-like (LOC106770459), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:6118185..6118464 (+ strand)
Length: 280
Type: five_prime_UTR
Position: Chr11:6118465..6118705 (+ strand)
Length: 241
Type: CDS
Position: Chr11:6120436..6120674 (+ strand)
Length: 239
Type: CDS
Position: Chr11:6120758..6120859 (+ strand)
Length: 102
Type: CDS
Position: Chr11:6121238..6121414 (+ strand)
Length: 177
Type: CDS
Position: Chr11:6121540..6121815 (+ strand)
Length: 276
Type: CDS
Position: Chr11:6122587..6122858 (+ strand)
Length: 272
Type: CDS
Position: Chr11:6122980..6123097 (+ strand)
Length: 118
Type: CDS
Position: Chr11:6123177..6123611 (+ strand)
Length: 435
Type: CDS
Position: Chr11:6124010..6124162 (+ strand)
Length: 153
Type: CDS
Position: Chr11:6124792..6124920 (+ strand)
Length: 129
Type: CDS
Position: Chr11:6125423..6125659 (+ strand)
Length: 237
Type: CDS
Position: Chr11:6126828..6126904 (+ strand)
Length: 77
Type: CDS
Position: Chr11:6128199..6128385 (+ strand)
Length: 187
Type: CDS
Position: Chr11:6128640..6128840 (+ strand)
Length: 201
Type: CDS
Position: Chr11:6129535..6129651 (+ strand)
Length: 117
Type: CDS
Position: Chr11:6129652..6129890 (+ strand)
Length: 239
Type: three_prime_UTR


>Vigan.11G053900.01
GCGCCAACAA AGCAGTTGCA GAGGATATTC GGTGAGGTTA ACGACAGAGA ATAAAATAGT GTGAAGGAGT GAGAAGCTCG
TGATTCGATT ACTTATCGGT CATATCGTAT CTCGACACGC CGTACATACA GGAACACCTC CATTTCCCTT ATAGTCACAC
AACACCCTCA CTCTCAAACT CACACTACCA AGCTCGTGAG CAAGAAAAGA AACAAACAAA CCTCTCTCTC TCTGCGATTA
TTGATCTCCG GAGAAGAGAG ACTGCGATTT GCGATTCGCA ATGGCTTCCA CCACAATGCG GTTCTCCGCT ACTTCCACCG
GTGCTGAGGC GCTTCCCCGT CGTAACTCCC TCGCCGGATT ATTAACCGTC TCTGCAAGAT CCTCCGCCAA ATCGAGGCTT
AGGTTTATTG GAAGGAGCGC CAACTTGAGC TTCATCCGGA GGCGGAGCTC TTTCTCTGTG AAGTGCGTCT CCGGAAGCGA
GGCCAGGAAG ACACTACACG ATCCCGTGTC TCAGCAACAA GAAGCCACTA CATCTCTCAG CTCCTTGACG CCAGATGCTT
CATCTATTGC CTCGAGTATT AAATACCATG CAGAGTTCAC TCCATTGTTT TCTCCACATA ATTTTGATCT ACCACAGGCC
TTTTCTGCAA CTGCACAAAG TGTTCGCGAT GCTCTTATTA TAAACTGGAA TGCCACCTAT GATTACTACG AGAGGCTGAA
TGTTAAGCAG GCATATTACC TTTCGATGGA ATTTTTGCAG GGTAGAGCAT TACTAAATGC AATAGGCAAT CTAGAGTTAA
CTGGTGCTTA TGCTGAGGCT TTGAGCAAGC TTGGGTATAC ATTAGAAAAT GTGGCATACC AGGAGCCAGA TGCTGCACTT
GGAAATGGTG GTCTTGGGCG ACTTGCTTCA TGTTTCTTGG ACTCTTTGGC AACCTTGAAC TATCCAGCTT GGGGTTATGG
ATTGAGATAT AAGTATGGTT TATTTAAACA ACGAATAACC AAAGAGGGGC AGGAGGAAGT TGCCGAAGAT TGGCTTGAGA
TGGGCAGTCC CTGGGAGATT GTTAGAAATG ATGTTTCATA TCCTATAAAG TTCTATGGCA AGGTTGTATC TGGGTCAGAT
GGTAAAAATC ATTGGATTGG AGGAGAAGAT ATAAAAGCTG TTGCACATGA TGTTCCCATA CCAGGATATA AAACTAAGAC
TACAATCAAC TTGAGACTTT GGTCTACAAA AGCTGCATCA GAAGATTTTG ATTTATATGC TTTTAATGCT GGAAGACACA
CTGAAGCATC TGAGGCTCTA GCAAATGCTG AAAAGATATG TTATATACTC TACCCTGGGG ATGAATCAAT AGAGGGCAAG
ATCCTTCGTC TCAAGCAACA ATATACTTTG TGTTCTGCTT CTCTTCAAGA TATAATTGCT TGTTTTGAGA GAAGATCAGG
AGCAAATGTG AATTGGGAAG AGTTCCCTGA AAAGGTTGCA GTGCAGATGA ATGATACACA TCCAACCTTG TGCATCCCAG
AGCTGATGAG AATCTTAATA GATGTAAAGG GTTTAAGTTG GAAAGATGCT TGGAATATTA CACAAAGGAC CGTAGCATAT
ACAAACCATA CTGTTCTTCC TGAGGCATTA GAGAAATGGA GCTTGGATCT TATGCAGAAA CTGCTTCCAC GCCATATTGA
GATAATAGAA ATGATTGATG AGGAGCTGAT TCGGACCATA TTGGCAGAAT ATGGCACTGC AGATTCAGAC TTGCTGGAGA
ATAAATTGAA GGAAATGAGA ATACTAGAAA ATGTTGAATT GCCTGAAGAA TTTGCAGATG TACTGGTTAA GTCCAAAGAG
ACCACTGATA TTCCTAGTGA GGAGCTGCAA AGTTCTGAAC AAGTAGAAGA AGAAGAAAAG AAAGATGATG AAGAAAATAA
AGATGATGAT AATGATGAAG TGGAAGGAGC CATTGCTAAA AAGAAGGGAA CAGATGAAAG TTCCATTGAG GATGAGAAAG
AAGAGTTGCC TGTGCCGATA CCAGAACCAC CAAAAGTTCG TATGGCAAAT CTGTGTGTTG TGGGTGGTCA TGCAGTGAAT
GGGGTTGCAG AGATTCATAG TGAAATTGTA AAAGATGAAG TTTTCAATGC GTTTTATAAG TTGTGGCCTG AGAAATTCCA
AAACAAAACA AATGGTGTGA CACCAAGGAG ATGGATCAAG TTTTGCAATC CGCTTCTGAG TAAAATAATA ACCGAGTGGA
TAGGTACAGA GGATTGGGTC CTAAATACAG AGAAATTGGC CGACCTACGG AAGTTTGTAG AGAATGAGGA TCTACAACTG
CAGTGGAGGG AAGCAAAGAG GAGTAACAAA GTTAAAGTTG CGGCATTTAT CAGAGAAAAA ACAGGGTATT TTGTCAGTCC
TGATGCAATG TTTGACATCC AGGTAAAGAG AATCCATGAA TATAAGCGAC AACTACTGAA CATACTTGGA ATTGTTTACC
GATACAAGAA GATGAAAGAA ATGAGTCCTG TTGAAAGGAA AGCAAATTTT GTTCCTAGAG TTTGTATATT TGGGGGGAAA
GCATTTGCTA CGTATGTGCA AGCCAAGAGA ATTGTGAAGT TTATTACAGA TGTTGGGGAA ACCGTTAATC ATGATCCTGA
AATAGGAGAT CTACTGAAGG TTATTTTTGT CCCTGATTAC AATGTCAGTG TTGCTGAGAT GCTTATTCCG GCAAGTGAAT
TGTCGCAACA TATCAGTACT GCTGGAATGG AAGCAAGTGG AACCAGCAAC ATGAAATTTG CAATGAATGG CTGCATATTG
ATTGGAACTT TAGACGGGGC CAACGTTGAA ATTAGGGAAG AGGTTGGTGC AGATAACTTC TTCCTCTTTG GTGCCGAGGC
TCCTGAAATT GCTGGGCTGA GGAAAGAAAG AGCAGAGGGA AAGTTCGTCG CGGATCCACG ATTTGAAGAG GTCAAAGAAT
TTGTCAGAAG TGGTGTTTTT GGATCTTACA ACTATGACGA ATTGATTGGG TCCTTAGAGG GAAATGAAGG TTTTGGTCGA
GCAGATTATT TCCTTGTGGG CAAGGACTTC CCCAGCTACA TAGAATGCCA AGAGAAGGTT GATGAAGCAT ACAGAGACCA
AAAAAAATGG ACAAGAATGT CAATATTGAA CACAGCAGGC TCATACAAGT TTAGCAGTGA CCGTACGATT CATGAATATG
CTCGAGAGAT ATGGAACATT CAACCAGCCC AATTGCCGTA GAAAGGTGCA GACGCACTTG GTGCCACGTA GTTATGATGA
TCCCTGATCA GCTTAATTCC TCGTACCAGA TAATAAATAA ATAAATATAA TTTTGCAAAC AAAGGCACTT CAAGTGCGCT
TTTGATCAAA ATAAGCTTGC AGTTGTTTAA TATATCTGTT ATGGATACTA CTAGTCGTTG TAAAGCTTTA CCATACCTTT
GTCTTATAAT AAATATTTAT TTACTTATCT CCAAATTCTC 

>Vigan.11G053900.01
ATGGCTTCCA CCACAATGCG GTTCTCCGCT ACTTCCACCG GTGCTGAGGC GCTTCCCCGT CGTAACTCCC TCGCCGGATT
ATTAACCGTC TCTGCAAGAT CCTCCGCCAA ATCGAGGCTT AGGTTTATTG GAAGGAGCGC CAACTTGAGC TTCATCCGGA
GGCGGAGCTC TTTCTCTGTG AAGTGCGTCT CCGGAAGCGA GGCCAGGAAG ACACTACACG ATCCCGTGTC TCAGCAACAA
GAAGCCACTA CATCTCTCAG CTCCTTGACG CCAGATGCTT CATCTATTGC CTCGAGTATT AAATACCATG CAGAGTTCAC
TCCATTGTTT TCTCCACATA ATTTTGATCT ACCACAGGCC TTTTCTGCAA CTGCACAAAG TGTTCGCGAT GCTCTTATTA
TAAACTGGAA TGCCACCTAT GATTACTACG AGAGGCTGAA TGTTAAGCAG GCATATTACC TTTCGATGGA ATTTTTGCAG
GGTAGAGCAT TACTAAATGC AATAGGCAAT CTAGAGTTAA CTGGTGCTTA TGCTGAGGCT TTGAGCAAGC TTGGGTATAC
ATTAGAAAAT GTGGCATACC AGGAGCCAGA TGCTGCACTT GGAAATGGTG GTCTTGGGCG ACTTGCTTCA TGTTTCTTGG
ACTCTTTGGC AACCTTGAAC TATCCAGCTT GGGGTTATGG ATTGAGATAT AAGTATGGTT TATTTAAACA ACGAATAACC
AAAGAGGGGC AGGAGGAAGT TGCCGAAGAT TGGCTTGAGA TGGGCAGTCC CTGGGAGATT GTTAGAAATG ATGTTTCATA
TCCTATAAAG TTCTATGGCA AGGTTGTATC TGGGTCAGAT GGTAAAAATC ATTGGATTGG AGGAGAAGAT ATAAAAGCTG
TTGCACATGA TGTTCCCATA CCAGGATATA AAACTAAGAC TACAATCAAC TTGAGACTTT GGTCTACAAA AGCTGCATCA
GAAGATTTTG ATTTATATGC TTTTAATGCT GGAAGACACA CTGAAGCATC TGAGGCTCTA GCAAATGCTG AAAAGATATG
TTATATACTC TACCCTGGGG ATGAATCAAT AGAGGGCAAG ATCCTTCGTC TCAAGCAACA ATATACTTTG TGTTCTGCTT
CTCTTCAAGA TATAATTGCT TGTTTTGAGA GAAGATCAGG AGCAAATGTG AATTGGGAAG AGTTCCCTGA AAAGGTTGCA
GTGCAGATGA ATGATACACA TCCAACCTTG TGCATCCCAG AGCTGATGAG AATCTTAATA GATGTAAAGG GTTTAAGTTG
GAAAGATGCT TGGAATATTA CACAAAGGAC CGTAGCATAT ACAAACCATA CTGTTCTTCC TGAGGCATTA GAGAAATGGA
GCTTGGATCT TATGCAGAAA CTGCTTCCAC GCCATATTGA GATAATAGAA ATGATTGATG AGGAGCTGAT TCGGACCATA
TTGGCAGAAT ATGGCACTGC AGATTCAGAC TTGCTGGAGA ATAAATTGAA GGAAATGAGA ATACTAGAAA ATGTTGAATT
GCCTGAAGAA TTTGCAGATG TACTGGTTAA GTCCAAAGAG ACCACTGATA TTCCTAGTGA GGAGCTGCAA AGTTCTGAAC
AAGTAGAAGA AGAAGAAAAG AAAGATGATG AAGAAAATAA AGATGATGAT AATGATGAAG TGGAAGGAGC CATTGCTAAA
AAGAAGGGAA CAGATGAAAG TTCCATTGAG GATGAGAAAG AAGAGTTGCC TGTGCCGATA CCAGAACCAC CAAAAGTTCG
TATGGCAAAT CTGTGTGTTG TGGGTGGTCA TGCAGTGAAT GGGGTTGCAG AGATTCATAG TGAAATTGTA AAAGATGAAG
TTTTCAATGC GTTTTATAAG TTGTGGCCTG AGAAATTCCA AAACAAAACA AATGGTGTGA CACCAAGGAG ATGGATCAAG
TTTTGCAATC CGCTTCTGAG TAAAATAATA ACCGAGTGGA TAGGTACAGA GGATTGGGTC CTAAATACAG AGAAATTGGC
CGACCTACGG AAGTTTGTAG AGAATGAGGA TCTACAACTG CAGTGGAGGG AAGCAAAGAG GAGTAACAAA GTTAAAGTTG
CGGCATTTAT CAGAGAAAAA ACAGGGTATT TTGTCAGTCC TGATGCAATG TTTGACATCC AGGTAAAGAG AATCCATGAA
TATAAGCGAC AACTACTGAA CATACTTGGA ATTGTTTACC GATACAAGAA GATGAAAGAA ATGAGTCCTG TTGAAAGGAA
AGCAAATTTT GTTCCTAGAG TTTGTATATT TGGGGGGAAA GCATTTGCTA CGTATGTGCA AGCCAAGAGA ATTGTGAAGT
TTATTACAGA TGTTGGGGAA ACCGTTAATC ATGATCCTGA AATAGGAGAT CTACTGAAGG TTATTTTTGT CCCTGATTAC
AATGTCAGTG TTGCTGAGAT GCTTATTCCG GCAAGTGAAT TGTCGCAACA TATCAGTACT GCTGGAATGG AAGCAAGTGG
AACCAGCAAC ATGAAATTTG CAATGAATGG CTGCATATTG ATTGGAACTT TAGACGGGGC CAACGTTGAA ATTAGGGAAG
AGGTTGGTGC AGATAACTTC TTCCTCTTTG GTGCCGAGGC TCCTGAAATT GCTGGGCTGA GGAAAGAAAG AGCAGAGGGA
AAGTTCGTCG CGGATCCACG ATTTGAAGAG GTCAAAGAAT TTGTCAGAAG TGGTGTTTTT GGATCTTACA ACTATGACGA
ATTGATTGGG TCCTTAGAGG GAAATGAAGG TTTTGGTCGA GCAGATTATT TCCTTGTGGG CAAGGACTTC CCCAGCTACA
TAGAATGCCA AGAGAAGGTT GATGAAGCAT ACAGAGACCA AAAAAAATGG ACAAGAATGT CAATATTGAA CACAGCAGGC
TCATACAAGT TTAGCAGTGA CCGTACGATT CATGAATATG CTCGAGAGAT ATGGAACATT CAACCAGCCC AATTGCCGTA
G

>Vigan.11G053900.01
MASTTMRFSA TSTGAEALPR RNSLAGLLTV SARSSAKSRL RFIGRSANLS FIRRRSSFSV KCVSGSEARK TLHDPVSQQQ
EATTSLSSLT PDASSIASSI KYHAEFTPLF SPHNFDLPQA FSATAQSVRD ALIINWNATY DYYERLNVKQ AYYLSMEFLQ
GRALLNAIGN LELTGAYAEA LSKLGYTLEN VAYQEPDAAL GNGGLGRLAS CFLDSLATLN YPAWGYGLRY KYGLFKQRIT
KEGQEEVAED WLEMGSPWEI VRNDVSYPIK FYGKVVSGSD GKNHWIGGED IKAVAHDVPI PGYKTKTTIN LRLWSTKAAS
EDFDLYAFNA GRHTEASEAL ANAEKICYIL YPGDESIEGK ILRLKQQYTL CSASLQDIIA CFERRSGANV NWEEFPEKVA
VQMNDTHPTL CIPELMRILI DVKGLSWKDA WNITQRTVAY TNHTVLPEAL EKWSLDLMQK LLPRHIEIIE MIDEELIRTI
LAEYGTADSD LLENKLKEMR ILENVELPEE FADVLVKSKE TTDIPSEELQ SSEQVEEEEK KDDEENKDDD NDEVEGAIAK
KKGTDESSIE DEKEELPVPI PEPPKVRMAN LCVVGGHAVN GVAEIHSEIV KDEVFNAFYK LWPEKFQNKT NGVTPRRWIK
FCNPLLSKII TEWIGTEDWV LNTEKLADLR KFVENEDLQL QWREAKRSNK VKVAAFIREK TGYFVSPDAM FDIQVKRIHE
YKRQLLNILG IVYRYKKMKE MSPVERKANF VPRVCIFGGK AFATYVQAKR IVKFITDVGE TVNHDPEIGD LLKVIFVPDY
NVSVAEMLIP ASELSQHIST AGMEASGTSN MKFAMNGCIL IGTLDGANVE IREEVGADNF FLFGAEAPEI AGLRKERAEG
KFVADPRFEE VKEFVRSGVF GSYNYDELIG SLEGNEGFGR ADYFLVGKDF PSYIECQEKV DEAYRDQKKW TRMSILNTAG
SYKFSSDRTI HEYAREIWNI QPAQLP*