VIGGS:GBrowse

Vigan.11G054600.01

Basic Information:

Name:	Vigan.11G054600.01 Multiple alignment Variant Information
Position:	Chr11:6185672..6187773 (- strand)
Length:	2102

Functional Information:

Description:	Similar to uncharacterized protein. [C6THE9, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S19e (IPR001266)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Ribosomal protein S19e, conserved site (IPR018277)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:54.22,140.11,149.40,98.13,248.65,387.38,306.71,128.18

Automatic updates:

Name:	NM_001248495 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527647 (LOC100527647), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001289265 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein S19-1 (LOC100805469), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:6185672..6185989 (- strand)
Length:	318
Type:	three_prime_UTR

Position:	Chr11:6185990..6186062 (- strand)
Length:	73
Type:	CDS

Position:	Chr11:6186464..6186647 (- strand)
Length:	184
Type:	CDS

Position:	Chr11:6186721..6186811 (- strand)
Length:	91
Type:	CDS

Position:	Chr11:6187629..6187712 (- strand)
Length:	84
Type:	CDS

Position:	Chr11:6187713..6187773 (- strand)
Length:	61
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G054600.01
GCCTACCAGA GTGAGATTGA GTTCTGAGAT AGCTAATTTT TATTTTTCCA GTGATTCATC AATGGCAACA GCGAGGACTG
TTAAGGATGT TTCGCCACAT GATTTTGTGA AGGCTTACGC ATCCCACCTC AAGCGTTCTG GCAAGATGGA GCTTCCTGAG
TGGACTGATA TTGTAAAAAC AGCCAAATTT AAGGAACTGG CTCCATATGA TCCAGACTGG TATTACGTGA GAGCTGCCTC
AATGGCAAGA AAGATTTATT TGAGAGGTGG TCTCGGTGTT GGTGCTTTCC AGAGAATCTA TGGTGGAAGC AAGAGGAATG
GAAGCCGCCC ACCACATTTC TGCAAGAGCA GTGGTGCTAT TGCCAGACAC ATTCTGCAAC AGTTGGAGAT CATGAACATT
GTTGAGATTG ATACTAAAGG AGGTAGGAAA ATCACTTCTA GTGGTCGAAG GGATCTTGAC CAAGTTGCTG GGCGAATTGT
GGTTGCTGCT TGAACTTGTT ATTGAGAACC GATAATGCAT ACCCTAGGAT GGATGTTTGC TTATTAGTAG AATTGGCATC
AAAGAAAAAT TAAGTATTGT TTGCTGAGAA TTTTATAATT TGTTTTGTTA AATGTTGAAG CTTTTTCTAG TTTGGAGTTG
GAGTTTTGAT CTTTAAGGTT TTGATTCAAG TTCTCAATGT GTTATCTTCT CCAATCCCAT CATTATATTG AACCTCCCTG
TTCAACAGCC TTGTTCTTTC TCTATTGCAT TATTTCCCTA TTATAAGAAA ACATGTGAAA AAGAAGCCAA AGAATAAGAA
AAAAGACGAA C

[show][hide][copy]CDS

>Vigan.11G054600.01
ATGGCAACAG CGAGGACTGT TAAGGATGTT TCGCCACATG ATTTTGTGAA GGCTTACGCA TCCCACCTCA AGCGTTCTGG
CAAGATGGAG CTTCCTGAGT GGACTGATAT TGTAAAAACA GCCAAATTTA AGGAACTGGC TCCATATGAT CCAGACTGGT
ATTACGTGAG AGCTGCCTCA ATGGCAAGAA AGATTTATTT GAGAGGTGGT CTCGGTGTTG GTGCTTTCCA GAGAATCTAT
GGTGGAAGCA AGAGGAATGG AAGCCGCCCA CCACATTTCT GCAAGAGCAG TGGTGCTATT GCCAGACACA TTCTGCAACA
GTTGGAGATC ATGAACATTG TTGAGATTGA TACTAAAGGA GGTAGGAAAA TCACTTCTAG TGGTCGAAGG GATCTTGACC
AAGTTGCTGG GCGAATTGTG GTTGCTGCTT GA

[show][hide][copy]PROTEIN

>Vigan.11G054600.01
MATARTVKDV SPHDFVKAYA SHLKRSGKME LPEWTDIVKT AKFKELAPYD PDWYYVRAAS MARKIYLRGG LGVGAFQRIY
GGSKRNGSRP PHFCKSSGAI ARHILQQLEI MNIVEIDTKG GRKITSSGRR DLDQVAGRIV VAA*