VIGGS:GBrowse

Vigan.11G063300.01

Basic Information:

Name:	Vigan.11G063300.01 Multiple alignment Variant Information
Position:	Chr11:7243134..7244111 (+ strand)
Length:	978

Functional Information:

Description:	Similar to uncharacterized protein. [A2XHZ1, Oryza sativa subsp. indica]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:4.82,3.26,8.04,25.37,7.35,21.35,5.97,7.12
Arabidopsis thaliana homolog:	AT5G15802.1

Automatic updates:

Name:	NM_001253098 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max zinc-finger protein HCF222-like protein (LOC100812361), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:7243134..7243136 (+ strand)
Length:	3
Type:	five_prime_UTR

Position:	Chr11:7243137..7243249 (+ strand)
Length:	113
Type:	CDS

Position:	Chr11:7243543..7243762 (+ strand)
Length:	220
Type:	CDS

Position:	Chr11:7243763..7244111 (+ strand)
Length:	349
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G063300.01
AAAATGGATA ACATCACAGC AAGTGAAATA GCTGGCTTGG CAGTGGGTGC TCTCCTCTTA TCTGCCACCG TTGCTGCCAC
CAAAGTTGAT GCCTTCTTCT CTTCTTCTCA ACGCAGCTCA TTGGGGATGT GCAAGCGATG TGGCAACCTG AGGAGATTGT
CTTGTTCCAC CTGCAAAGGA ACCGGGTCTA TTAGAGAAGG GGGATTGCTT GGTATTAAAC CTCTTGAGGA TTTGTTTGAA
ACAATTGATA ACAGTGAATC AAAGGTGAAG CAGATAGCAT GTGTAAAATG TCAAGCCAAA GGTTATTTTT CATGTCCTAA
TTGTTCTCAA CTATAACCAC TCTGATTTAA TCTTCTCTGT CTCCAATTAT AGCATTATGA ATTATGAATA CAACTCCTCA
CATGTAGAGG TATGAAACCC CATTTTCTTC TTCTCCTGCT ATAAAATCCC TTTATACCTT GTTTCTAAAA CTGGTATAAT
TTGTAATTTT GTATACTGCT TTGCCGGGTT TCTTGGTGTG TTTTGTTAAA CAGATGTTTT CATCTGTACT AATCATTGTT
CTTGATTTAA AAGTTTTGAA CCCATTTATG TGTGCTAAAT TTGGTACACT TCTTTAGTTC CTTCTATTAA GATTTTGTGC
ATCTGTTTAG TCTGTGGACA ACATGTTAGA GCAGTCATGC GGTAA

[show][hide][copy]CDS

>Vigan.11G063300.01
ATGGATAACA TCACAGCAAG TGAAATAGCT GGCTTGGCAG TGGGTGCTCT CCTCTTATCT GCCACCGTTG CTGCCACCAA
AGTTGATGCC TTCTTCTCTT CTTCTCAACG CAGCTCATTG GGGATGTGCA AGCGATGTGG CAACCTGAGG AGATTGTCTT
GTTCCACCTG CAAAGGAACC GGGTCTATTA GAGAAGGGGG ATTGCTTGGT ATTAAACCTC TTGAGGATTT GTTTGAAACA
ATTGATAACA GTGAATCAAA GGTGAAGCAG ATAGCATGTG TAAAATGTCA AGCCAAAGGT TATTTTTCAT GTCCTAATTG
TTCTCAACTA TAA

[show][hide][copy]PROTEIN

>Vigan.11G063300.01
MDNITASEIA GLAVGALLLS ATVAATKVDA FFSSSQRSSL GMCKRCGNLR RLSCSTCKGT GSIREGGLLG IKPLEDLFET
IDNSESKVKQ IACVKCQAKG YFSCPNCSQL *