GBrowse Details

Vigan.11G063700.01

Basic Information:
Name: Vigan.11G063700.01
Multiple alignment
Variant Information
Position: Chr11:7295611..7300676 (+ strand)
Length: 5066
Functional Information:
Description: Similar to Developmental protein SEPALLATA 2-like protein. [T2DPG6, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,0.02,81.70,0.07,0.04,63.69,0.12,0.42
Automatic updates:
Name: NM_001348519 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor SEP1 (SEP1), transcript variant 2, mRNA.
PubMed ID: 19289160 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:7295611..7296031 (+ strand)
Length: 421
Type: five_prime_UTR
Position: Chr11:7296032..7296216 (+ strand)
Length: 185
Type: CDS
Position: Chr11:7298662..7298740 (+ strand)
Length: 79
Type: CDS
Position: Chr11:7299141..7299205 (+ strand)
Length: 65
Type: CDS
Position: Chr11:7299426..7299525 (+ strand)
Length: 100
Type: CDS
Position: Chr11:7299695..7299736 (+ strand)
Length: 42
Type: CDS
Position: Chr11:7299817..7299858 (+ strand)
Length: 42
Type: CDS
Position: Chr11:7300107..7300243 (+ strand)
Length: 137
Type: CDS
Position: Chr11:7300326..7300431 (+ strand)
Length: 106
Type: CDS
Position: Chr11:7300432..7300676 (+ strand)
Length: 245
Type: three_prime_UTR


>Vigan.11G063700.01
CTGCACTCCA TTTTATGGTG GAGATTGGAA GAAGATAAAA GAGAAAAGAA AAAAAAGAGA AGATTTGAGG ATGAAAATGA
TGAGTTAGCA AAGAGAGATA AACACTTACA AGTTACAAGT ATTGTGTAGT TGTTAGCTTT GTGATGTTTC TCTCTCTTGA
TTTTTTCTCT CTCTAGGGTT CCAAGTTTTG AACTTGAGAA CTCTGTCTTG TTTTTCACAA ATTTGGCTGC ACTTGGGTAC
TGACCCAGAA AAGAAGGTTC AACAGGTACC TAAGAGAAGG AAGGGGTGGA AAAAAATAGA AACTGTACGT ATGAAAGAAG
AAATAAAGAG ATAAATAAGA AAAGGGTAAA TTTTGAATAA GAGTGAGGAA TAGAATAACA CAATAATAGT ATTAATATTG
ATAAGAATCA AGTGGGAAAA TATGGGGAGG GGAAGAGTGG AACTCAAAAG GATAGAGAAC AAGATAAACA GGCAGGTAAC
GTTTGCAAAG AGGAGAAATG GCCTTCTCAA GAAAGCCTAT GAGCTTTCTG TTCTCTGTGA TGCTGAGGTT GCCCTTATCA
TCTTTTCCAC CCGTGGCAAG CTTTATGAAT TTTGCAGCAG TTCAAGCATG CTCAAAACAC TTGAAAGGTA CCAAAAGTGC
AGCTATGGTG CAGTTGAAGT CAGCAAACCT GCCAAAGAGC TTGAGCAGAG CAGCTATCGT GAGTACTTGA AGCTCAAAGG
AAGATTTGAA TCTCTTCAGA GGACCCAAAG AAACCTTCTA GGTGAAGACT TGGGCCCATT AAATACCAAA GAACTTGAGC
AGCTTGAGAG GCAGCTAGAT TCATCTCTCA AGCAAGTGAG GTCGACAAAG ACTCAATTCA TGCTGGACCA GTTAGCTGAT
CTTCAAAATA AGGAGCAGAT GTTGGTAGAA GCAAACAGAG CTTTGACCAT GAAGCTGGAT GAAATCAATT CAAGAAACCA
GTATAGGCAA ACATGGGAAG CTGGCGATCA AAGTATGCCG TATGGTACTC AGAATGCTCA TTCTCAAGGC TTCTTCCAGC
CCTTGGAGTG CAACCCTACA TTGCAGATAG GTTCTGACTA CAGGTACAAC CCTGAAGCCT CAGATCAGCT AACTGCCACA
ACTCAAGCTC AACAAGTTCA ACAAGTGAAC GGTTTTATTC CTGGATGGAT GCTTTGAACT GAGCTAAGTA TTTAGCTGGC
TACATAAATA AAATTAGCAG ACACCTAAGG CCAAAGTCAA AATGCCTCTT GGTGTTGGAA ATGTGTAAAT GCTGCTTGTG
CTTCTGTTAT TTATTTTGGC ATAAAAACAG CAGTGACTGA CTTAAAACTA TTAAAACTTT AGCCATTGAC TTTTGGCTTG
TAAGAAGATT ACAGTATGTT GAATATCTTT GAAGGACTAG TGTTATCTGA CTGAATGACC AG

>Vigan.11G063700.01
ATGGGGAGGG GAAGAGTGGA ACTCAAAAGG ATAGAGAACA AGATAAACAG GCAGGTAACG TTTGCAAAGA GGAGAAATGG
CCTTCTCAAG AAAGCCTATG AGCTTTCTGT TCTCTGTGAT GCTGAGGTTG CCCTTATCAT CTTTTCCACC CGTGGCAAGC
TTTATGAATT TTGCAGCAGT TCAAGCATGC TCAAAACACT TGAAAGGTAC CAAAAGTGCA GCTATGGTGC AGTTGAAGTC
AGCAAACCTG CCAAAGAGCT TGAGCAGAGC AGCTATCGTG AGTACTTGAA GCTCAAAGGA AGATTTGAAT CTCTTCAGAG
GACCCAAAGA AACCTTCTAG GTGAAGACTT GGGCCCATTA AATACCAAAG AACTTGAGCA GCTTGAGAGG CAGCTAGATT
CATCTCTCAA GCAAGTGAGG TCGACAAAGA CTCAATTCAT GCTGGACCAG TTAGCTGATC TTCAAAATAA GGAGCAGATG
TTGGTAGAAG CAAACAGAGC TTTGACCATG AAGCTGGATG AAATCAATTC AAGAAACCAG TATAGGCAAA CATGGGAAGC
TGGCGATCAA AGTATGCCGT ATGGTACTCA GAATGCTCAT TCTCAAGGCT TCTTCCAGCC CTTGGAGTGC AACCCTACAT
TGCAGATAGG TTCTGACTAC AGGTACAACC CTGAAGCCTC AGATCAGCTA ACTGCCACAA CTCAAGCTCA ACAAGTTCAA
CAAGTGAACG GTTTTATTCC TGGATGGATG CTTTGA

>Vigan.11G063700.01
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS SSMLKTLERY QKCSYGAVEV
SKPAKELEQS SYREYLKLKG RFESLQRTQR NLLGEDLGPL NTKELEQLER QLDSSLKQVR STKTQFMLDQ LADLQNKEQM
LVEANRALTM KLDEINSRNQ YRQTWEAGDQ SMPYGTQNAH SQGFFQPLEC NPTLQIGSDY RYNPEASDQL TATTQAQQVQ
QVNGFIPGWM L*