VIGGS:GBrowse

Vigan.11G065800.01

Basic Information:

Name:	Vigan.11G065800.01 Multiple alignment Variant Information
Position:	Chr11:7552877..7554812 (+ strand)
Length:	1936

Functional Information:

Description:	Similar to Uncharacterized protein. [I1N6H2, Glycine max]
InterPro:	Biogenesis of lysosome-related organelles complex-1, subunit 2 (IPR019269)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:3.39,4.73,6.85,5.68,5.81,5.12,5.53,6.55
Arabidopsis thaliana homolog:	AT5G49550.1

Automatic updates:

Name:	NM_001251086 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305617 (LOC100305617), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:7552877..7554020 (+ strand)
Length:	1144
Type:	five_prime_UTR

Position:	Chr11:7554021..7554131 (+ strand)
Length:	111
Type:	CDS

Position:	Chr11:7554284..7554565 (+ strand)
Length:	282
Type:	CDS

Position:	Chr11:7554566..7554812 (+ strand)
Length:	247
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G065800.01
TAAAAAGTAA AAATTTATAA TAAAATAGAA AACGCCAACA AGGGTGGACA AAAAGGAACA AAGGAAAAAT TAGCTTCCTG
ATTGAACAAA ACCTGCAAAC AACGTAAGTC TCCTTCCAAT TGCACTGTGT TCATCCCATT CTGTGAGTGT TCCTTTTCCC
TGCATTTCAT AGTATAATCA ATTTTCTCTT TTTCTGAGAC TGATTTAATT GATTTCTGCT ATATGCACGT TCATTTCTGA
TATCATCGTT TTAGGGAATG AATTTCCTTC AGTTTGATCA ATTGGGTTGG AAGCGAAGCC TTTGTGGATC ACTGATTGGA
TTTCAAAGAT CTGTTTTTTA AACAATTTCA ATCGAATTCC TTCCTCTTTT CTCCATGTAT CCCTCACTCC CCCTCCGTCG
CGACAGGCCT GCCGCCGACC GCCCCCTCGC CGCCGTGGCC AATTCCCCAA CTCAGATTTG GGTTTTTAAT GGTTTTCAAA
TTTGAGTTCC TCTCCTACTT TTTTTTATCC TCGTTCTTTT ATTATTTCAG TTAAAGAAGT TATAATCGGC AGTGAGATGT
GTTTTATACT GTTACCAATA GATATGAAAT ATTATTATTA TTATTGTACT GATTAATATT TTTTATTATG TATATTTAGT
ATGAGATATG CTACAGCATT ATTGTCACAA TTCCAAGGAG TAAAGTTTAC AGGTTCCATA AATATCTAAT ATTGGTATTA
ATAGTTGCAA GGCTATATAA AATATATGTA GTTGTTTTCA ATTTGTTAGT TTTGTTTTTT TGTTGATGGT GTCAGGCTAT
ATAATCTTTT TAGCTATGCT TGACTTGCTT CCTTTCCATC TTATTAATCA CTGAACTTAA ATGTTTCCTG AACTTTTCTC
TGGTGTTGTC TTTCTGAATG CTGCTTAAAT TTAAGGTAAG AAAAATAAGG GGAAACTGGA GAATTTTTAG AGGCAGAATG
GGGGGGGTCT TTGGTGCAAT ATGGAAACTC TTCATCCAAT TTATGAGAAG AACGTTAGTG TTTGATTTCT GAGCTTGCAA
TTACATTGGG TTGTTGTTTT CAAATTACTG CAGTTTGGAC CTGAAAACCA GCTCTTGGTT GGTTGTGACC TTGTCAATTG
GTGAAATATA TATGCTCTCC AACTATGGAT AACATGAAGA AAGATGAACC TCAAGATGAG AAGCCAGATG AGCTTGCTGA
ATCTCTGGAT GATCTATTCT GTAGCATTTC CACCATGATC AAATCCGAGC TTCAGGGGAC AAATAATCAC CTAGAACTGT
TGGAGAAGAT GAATGTAAGA GTGGCAGAAG AGTACAAAGG GTTTGGTGAC TTGGCTTCAG GGTTGAGGGT TTTTGTAGAG
CAGTTGAAAT GCAAGAGTGG TAGCTTCAAT GAATATGTTG AGCAGATTGA TAACATAGAG AAGCAGGTGA CTGAGTTTGA
AGCTGTTGTG TCTATGCTTG ATAAGTATGT TGCTCTGTTG GAATCAAGAG TGCAATATGT GTACCTTCCC AAAATCCATC
TTCCTAATCA ACAATAGTGT AAAACTTTTA CTTTTCATTA TTTTCTCTTC TCAAGTGAAT GAATTGCTAG ATTTACCATC
TTGTAGATTT ACATATGTTC TCCTTTGTCA AAACAAAAAG TATTGAAAGG CCTACCATGA TTTATGTATG CAATAATCTT
TAAACTCTTT CAATTAGCAT CATAATTAAA TACTTCAAGA AAATCATGTT TATATATCAA TCTTAGTTCC CATATGTAGG
TCAGCAGACC AAATTGTACC CTGG

[show][hide][copy]CDS

>Vigan.11G065800.01
ATGGATAACA TGAAGAAAGA TGAACCTCAA GATGAGAAGC CAGATGAGCT TGCTGAATCT CTGGATGATC TATTCTGTAG
CATTTCCACC ATGATCAAAT CCGAGCTTCA GGGGACAAAT AATCACCTAG AACTGTTGGA GAAGATGAAT GTAAGAGTGG
CAGAAGAGTA CAAAGGGTTT GGTGACTTGG CTTCAGGGTT GAGGGTTTTT GTAGAGCAGT TGAAATGCAA GAGTGGTAGC
TTCAATGAAT ATGTTGAGCA GATTGATAAC ATAGAGAAGC AGGTGACTGA GTTTGAAGCT GTTGTGTCTA TGCTTGATAA
GTATGTTGCT CTGTTGGAAT CAAGAGTGCA ATATGTGTAC CTTCCCAAAA TCCATCTTCC TAATCAACAA TAG

[show][hide][copy]PROTEIN

>Vigan.11G065800.01
MDNMKKDEPQ DEKPDELAES LDDLFCSIST MIKSELQGTN NHLELLEKMN VRVAEEYKGF GDLASGLRVF VEQLKCKSGS
FNEYVEQIDN IEKQVTEFEA VVSMLDKYVA LLESRVQYVY LPKIHLPNQQ *