GBrowse Details

Vigan.11G079000.01

Basic Information:
Name: Vigan.11G079000.01
Multiple alignment
Variant Information
Position: Chr11:9371070..9376153 (+ strand)
Length: 5084
Functional Information:
Description: Similar to Chloride channel. [Q0IJ86, Glycine max]
GO: Biological Process: chloride transport (GO:0006821)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: membrane (GO:0016020)
Molecular Function: ion channel activity (GO:0005216)
Molecular Function: voltage-gated chloride channel activity (GO:0005247)
Molecular Function: adenyl nucleotide binding (GO:0030554)
InterPro: CBS domain (IPR000644)
Chloride channel, voltage gated (IPR001807)
Chloride channel ClC-plant (IPR002251)
Chloride channel, core (IPR014743)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.02,1.52,9.64,2.45,1.47,22.79,5.12
Arabidopsis thaliana homolog: AT3G27170.1, AT5G26240.1, AT5G33280.1, AT5G40890.1, AT5G49890.1
Automatic updates:
Name: NM_001249565 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chloride channel (CLC1), mRNA.
PubMed ID: 22921676 NCBI(pubmed)
17080938 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:9371070..9371370 (+ strand)
Length: 301
Type: five_prime_UTR
Position: Chr11:9371371..9371561 (+ strand)
Length: 191
Type: CDS
Position: Chr11:9371671..9371871 (+ strand)
Length: 201
Type: CDS
Position: Chr11:9372179..9372356 (+ strand)
Length: 178
Type: CDS
Position: Chr11:9373189..9373721 (+ strand)
Length: 533
Type: CDS
Position: Chr11:9374357..9375506 (+ strand)
Length: 1150
Type: CDS
Position: Chr11:9375768..9375863 (+ strand)
Length: 96
Type: CDS
Position: Chr11:9375864..9376153 (+ strand)
Length: 290
Type: three_prime_UTR


>Vigan.11G079000.01
GTGAAATTTC TACCTAAGTT TGTCATTTTT TATGTATTTA AAAGGCCGAA AGATAATCAT AAATACTAAC CACAGCAATA
ACAACAAGAA TCTCATCTAA TGATGGGTCC ACTAGTTTTA CTTTGTCAAT CTTGCTTAAC ATATGTCATA ATTTAAACGG
AAATGACCAG TGCTTTGAAT TGCTTTTCCA TATATAGGTT TGTTGATGCA CTTTGTTCCA ATCCAAAACT TCTTTTGGCA
AGGGTGTCAA CTCCAGATAT TGATCAGTTT CTGTAGCTCA ACTATTTGGT GAGTTGTTCC AATGAGTAAG GAATCTGGTC
TGAACAAAGA AAGCACATCA ATGAATGACA CCATGGTGGA AGAGGTTGAA GAAAGAGATC CAGAAAGCAA TCCACTGAAT
GAGCCTCTGC TCAAGAGGAA CAGGACATTG TCTTCCAATC CACTTGCTCT TGTTGGAGCA AAAGTTTCCT ACATAGAAAG
CTTGGACTAT GAGATCAATG AGAATGATCT GTTCAAACAA GATTGGAGGA GCAGATCAAG AACTCAAGTG TTGCAGTACA
TATTCTGGAA ATGGGCTCTT GCATTCCTTG TTGGACTTCT CACTGGTGTC ATAGCCACTT TGATCAATCT TGCTATAGAG
AACATTGCAG GGTACAAGCT TCTTGCTGTT GTCAACTTTA TCCAAAAGGA AAGGTACTTG ACAGGGTTCC TATATTTCAC
TGGAGCTAAT TTCATTTTGA CATTTGTTGC TTCTATTCTG TGTGTGTGTT TTGCACCCAC AGCTGCTGGA CCTGGAATAC
CAGAAATCAA AGCTTATCTT AATGGGGTTG ATACTCCCAA CATGTATGGT GCCACAACAT TGTTTGTTAA GATAATTGGA
AGCATTGGAG CTGTATCTGC AGGCCTAGAT TTAGGAAAAG AAGGGCCCTT GGTACACATT GGTAGCTGCA TTGCTTCATT
ACTTGGTCAA GGCGGCCCTG ACAATTACAG GATCAAGTGG CGGTGGTTGA GGTATTTCAA CAATGATCGT GACCGTAGGG
ATCTCATCAC CTGTGGTGCT TCTTCAGGGG TCTGTGCAGC TTTCAGGGCA CCAGTGGGCG GAGTTCTCTT TGCTCTTGAG
GAGGTGGCAA CATGGTGGAG AAGTGCTCTC CTCTGGAGAA CTTTTTTCAG CACAGCTGTG GTTGTGGTTG TGCTTAGGAC
AACCATTGAA CTTTGCCACA AAGGAAAATG TGGCCTTTTC GGTGAAGGGG GGCTCATCAT GTTTGATGTG AGTGATGTCA
CTGTGAATTA CAATGTAATC GATATCATCC CTGTTGTTAT CATTGGAGTC CTTGGTGGGG TATTGGGAAG CCTTTACAAC
TACCTTCTGC ATAAAGTCCT CCGTCTCTAC AATCTCATCA ATCAGAAAGG AAAAATGTAC AAGCTCCTCC TCAGTCTTTC
AGTTGCACTC TTCACATCAA TATGCCAATA CTGTCTCCCA TTCCTAGCAA AATGCACCCC TTGTGATCCT TCCCTTTCAG
AAGTGTGTCC TACAAACGGA CGTTCTGGAA ACTTCAAACA ATTCAACTGC CCAAATGGCC ACTACAATGA TCTTGCAACG
CTGCTTCTGA CCACCAATGA TGATGCTGTT AGAAACATAT TCTCAACCAA CACTCCTTTT GAGTACCAAC CTTTCTCCAT
CGTAATTTTC TTTGGACTCT ATTGCATACT AGGACTAATC ACCTTTGGGA TTGCTGTGCC ATCAGGGCTC TTCCTACCAA
TCATTCTCAT GGGTTCAGGT TACGGCAGAC TTCTTGGAAT GCTCATGAGA CCTCATACAA ACATTGATCA AGGGCTATTT
GCAGTCCTTG GTGCAGCCTC ACTTATGGCG GGATCCATGA GAATGACTGT GTCCCTTTGT GTGATCTTCC TTGAACTAAC
CAACAACCTT CTCCTACTAC CAATAACCAT GATTGTTCTC CTCATAGCTA AAACTGTTGG AGACAGCTTC AACCCAAGCA
TCTATGAGAT CATCCTGCAC TTGAAAGGCC TCCCTTTCAT GGATGCAAAC CCTGAGCCAT GGATGAGAAA CCTCACTGTG
GGAGAACTTG TTGATGTGAA GCCAGCAGTG ATCAGCTTCA GAGGAGTAGA AAAGGTAGCC AATATAGTCA ATGCCCTGAG
AAACACCACA CATAATGGTT TTCCTGTAAT GGACTGTGGA GTGGTGCCAG CAACAGGAGT GGCCAGTGAG GCTACAGAAC
TTCATGGAAT CATTCTAAGA GCACACCTTA TTCAGGTGCT CAAGAAGAAG TGGTTCTTGA AGGAGAAAAG GAGAACTGAG
GAATGGGAAG TGAGAGAGAA ATTTACATGG GTAGAGCTGG CTGAGAGAGA AGGGAACATT GAAGATGTGG CTGTGACTAA
AGAAGAAATG GAGATGTTTG TTGATCTACA CCCTCTCACC AACACAACTC CCTTCACAGT GCTAGAGAGC ATGTCAGTAG
CAAAAGCCAT GGTTCTCTTC AGACAAGTAG GACTTCGTCA TATGCTTGTT GTGCCAAAAT ATCAAGCATC TGGGGTGTCT
CCTGTGATTG GGATCTTGAC GAGGCAGGAT CTTCTGGCAC ACAACATTCT GACAGTGTTT CCTCAATTGT CAAAACCAAA
GAGGAAGTGA AGCTTTTGTT ATCAAATATG AATGAATGGA CAAGCAGCTT TATTGGGACA TTCTCTCTAT TCAGCATGAA
GCTTTTCCTC AGTTTTGCAT TATTTGGGTC ATGCATGGAG AAGAAGATAC AACATTGATG TAAACCATAT TCATTTTTTC
CTATTTTTTT CCTCACAGGT TTTTATCTGG TAATGAGATC ATATCGTCTT CCCTTGTTAA ATAACGATAA TGATAATATC
AACGGTAATT TTTCTCTTTC CGCTTCATAA AAAGGTACTA AGATTTTCCT CTCTTTTTTT 

>Vigan.11G079000.01
ATGAGTAAGG AATCTGGTCT GAACAAAGAA AGCACATCAA TGAATGACAC CATGGTGGAA GAGGTTGAAG AAAGAGATCC
AGAAAGCAAT CCACTGAATG AGCCTCTGCT CAAGAGGAAC AGGACATTGT CTTCCAATCC ACTTGCTCTT GTTGGAGCAA
AAGTTTCCTA CATAGAAAGC TTGGACTATG AGATCAATGA GAATGATCTG TTCAAACAAG ATTGGAGGAG CAGATCAAGA
ACTCAAGTGT TGCAGTACAT ATTCTGGAAA TGGGCTCTTG CATTCCTTGT TGGACTTCTC ACTGGTGTCA TAGCCACTTT
GATCAATCTT GCTATAGAGA ACATTGCAGG GTACAAGCTT CTTGCTGTTG TCAACTTTAT CCAAAAGGAA AGGTACTTGA
CAGGGTTCCT ATATTTCACT GGAGCTAATT TCATTTTGAC ATTTGTTGCT TCTATTCTGT GTGTGTGTTT TGCACCCACA
GCTGCTGGAC CTGGAATACC AGAAATCAAA GCTTATCTTA ATGGGGTTGA TACTCCCAAC ATGTATGGTG CCACAACATT
GTTTGTTAAG ATAATTGGAA GCATTGGAGC TGTATCTGCA GGCCTAGATT TAGGAAAAGA AGGGCCCTTG GTACACATTG
GTAGCTGCAT TGCTTCATTA CTTGGTCAAG GCGGCCCTGA CAATTACAGG ATCAAGTGGC GGTGGTTGAG GTATTTCAAC
AATGATCGTG ACCGTAGGGA TCTCATCACC TGTGGTGCTT CTTCAGGGGT CTGTGCAGCT TTCAGGGCAC CAGTGGGCGG
AGTTCTCTTT GCTCTTGAGG AGGTGGCAAC ATGGTGGAGA AGTGCTCTCC TCTGGAGAAC TTTTTTCAGC ACAGCTGTGG
TTGTGGTTGT GCTTAGGACA ACCATTGAAC TTTGCCACAA AGGAAAATGT GGCCTTTTCG GTGAAGGGGG GCTCATCATG
TTTGATGTGA GTGATGTCAC TGTGAATTAC AATGTAATCG ATATCATCCC TGTTGTTATC ATTGGAGTCC TTGGTGGGGT
ATTGGGAAGC CTTTACAACT ACCTTCTGCA TAAAGTCCTC CGTCTCTACA ATCTCATCAA TCAGAAAGGA AAAATGTACA
AGCTCCTCCT CAGTCTTTCA GTTGCACTCT TCACATCAAT ATGCCAATAC TGTCTCCCAT TCCTAGCAAA ATGCACCCCT
TGTGATCCTT CCCTTTCAGA AGTGTGTCCT ACAAACGGAC GTTCTGGAAA CTTCAAACAA TTCAACTGCC CAAATGGCCA
CTACAATGAT CTTGCAACGC TGCTTCTGAC CACCAATGAT GATGCTGTTA GAAACATATT CTCAACCAAC ACTCCTTTTG
AGTACCAACC TTTCTCCATC GTAATTTTCT TTGGACTCTA TTGCATACTA GGACTAATCA CCTTTGGGAT TGCTGTGCCA
TCAGGGCTCT TCCTACCAAT CATTCTCATG GGTTCAGGTT ACGGCAGACT TCTTGGAATG CTCATGAGAC CTCATACAAA
CATTGATCAA GGGCTATTTG CAGTCCTTGG TGCAGCCTCA CTTATGGCGG GATCCATGAG AATGACTGTG TCCCTTTGTG
TGATCTTCCT TGAACTAACC AACAACCTTC TCCTACTACC AATAACCATG ATTGTTCTCC TCATAGCTAA AACTGTTGGA
GACAGCTTCA ACCCAAGCAT CTATGAGATC ATCCTGCACT TGAAAGGCCT CCCTTTCATG GATGCAAACC CTGAGCCATG
GATGAGAAAC CTCACTGTGG GAGAACTTGT TGATGTGAAG CCAGCAGTGA TCAGCTTCAG AGGAGTAGAA AAGGTAGCCA
ATATAGTCAA TGCCCTGAGA AACACCACAC ATAATGGTTT TCCTGTAATG GACTGTGGAG TGGTGCCAGC AACAGGAGTG
GCCAGTGAGG CTACAGAACT TCATGGAATC ATTCTAAGAG CACACCTTAT TCAGGTGCTC AAGAAGAAGT GGTTCTTGAA
GGAGAAAAGG AGAACTGAGG AATGGGAAGT GAGAGAGAAA TTTACATGGG TAGAGCTGGC TGAGAGAGAA GGGAACATTG
AAGATGTGGC TGTGACTAAA GAAGAAATGG AGATGTTTGT TGATCTACAC CCTCTCACCA ACACAACTCC CTTCACAGTG
CTAGAGAGCA TGTCAGTAGC AAAAGCCATG GTTCTCTTCA GACAAGTAGG ACTTCGTCAT ATGCTTGTTG TGCCAAAATA
TCAAGCATCT GGGGTGTCTC CTGTGATTGG GATCTTGACG AGGCAGGATC TTCTGGCACA CAACATTCTG ACAGTGTTTC
CTCAATTGTC AAAACCAAAG AGGAAGTGA

>Vigan.11G079000.01
MSKESGLNKE STSMNDTMVE EVEERDPESN PLNEPLLKRN RTLSSNPLAL VGAKVSYIES LDYEINENDL FKQDWRSRSR
TQVLQYIFWK WALAFLVGLL TGVIATLINL AIENIAGYKL LAVVNFIQKE RYLTGFLYFT GANFILTFVA SILCVCFAPT
AAGPGIPEIK AYLNGVDTPN MYGATTLFVK IIGSIGAVSA GLDLGKEGPL VHIGSCIASL LGQGGPDNYR IKWRWLRYFN
NDRDRRDLIT CGASSGVCAA FRAPVGGVLF ALEEVATWWR SALLWRTFFS TAVVVVVLRT TIELCHKGKC GLFGEGGLIM
FDVSDVTVNY NVIDIIPVVI IGVLGGVLGS LYNYLLHKVL RLYNLINQKG KMYKLLLSLS VALFTSICQY CLPFLAKCTP
CDPSLSEVCP TNGRSGNFKQ FNCPNGHYND LATLLLTTND DAVRNIFSTN TPFEYQPFSI VIFFGLYCIL GLITFGIAVP
SGLFLPIILM GSGYGRLLGM LMRPHTNIDQ GLFAVLGAAS LMAGSMRMTV SLCVIFLELT NNLLLLPITM IVLLIAKTVG
DSFNPSIYEI ILHLKGLPFM DANPEPWMRN LTVGELVDVK PAVISFRGVE KVANIVNALR NTTHNGFPVM DCGVVPATGV
ASEATELHGI ILRAHLIQVL KKKWFLKEKR RTEEWEVREK FTWVELAERE GNIEDVAVTK EEMEMFVDLH PLTNTTPFTV
LESMSVAKAM VLFRQVGLRH MLVVPKYQAS GVSPVIGILT RQDLLAHNIL TVFPQLSKPK RK*