GBrowse Details

Vigan.11G087100.01

Basic Information:
Name: Vigan.11G087100.01
Multiple alignment
Variant Information
Position: Chr11:10663524..10665249 (+ strand)
Length: 1726
Functional Information:
Description: Similar to Uncharacterized protein. [I1MLR2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.23,6.80,4.18,0.69,4.69,3.63,6.23,5.23
Arabidopsis thaliana homolog: AT5G14360.1
Automatic updates:
Name: NM_001252739 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100815369 (LOC100815369), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:10663524..10663736 (+ strand)
Length: 213
Type: five_prime_UTR
Position: Chr11:10663737..10663995 (+ strand)
Length: 259
Type: CDS
Position: Chr11:10664711..10664937 (+ strand)
Length: 227
Type: CDS
Position: Chr11:10664938..10665249 (+ strand)
Length: 312
Type: three_prime_UTR


>Vigan.11G087100.01
AGAAAAGACA ATTTGCCCAT ATTGTCCAAT GTCTCCCCAT GTGTTCCTTC AACTCTTGCT TTTTTGCAAC ACTAGGGCGG
CTTCTATTTT ATTCATGTTC TTCTTTCAGC CTTTTCAACA CTTTCCCTCT ATTATATAAG GGCCTAACCT CATCACCTTC
TCTTTGCTCC TTCACTTTCC AAACCAAAGA AGAGATCAAA GAGTGTGAGA AAGATGATGA AGTTGAGGTC AAAGAGGTTT
TCAAGAAGCA GCTCCAAGCT TGGCAACAAT GGCAGCAAAG GAGCAGCATC ATCCCCAGAA AAGGATGCCA AAAACAATGG
TGAAATCAAG TGGGAACTTA GGCCTGGTGG CATGCTTGTT CAGAAGAGGG AGAGTAATAA TAACCAAAGT TCTGGAGAGG
GAGTCATTGC TGTTAGAGTC TCCACTGTCT CACAATGGCA TGACATTTCC ATTGATGCCA CTTCAACTTT TGGGGAACTA
AAACTGATTT TGTCACTGGT GACAAATTTG GATCCCAGAG AGCAGAGGCT TCTGTTCAAG GGCAAAGAGA GGGAGGACAG
TGAATTCCTT CACATGGTTG GGGTGAGAGA CAAGGACAAG GTTCTAATGC TTGAGGATCC TGCAACAAAG GAGATGAAGC
TTCTTGGCAT GGCAAGAGGC CAACCCATTA ACAATACTTG CTGTACCATC GCTGTATGAA CACCCTTTGA TTTCATCAAA
CTTCTTGTGA ATTAGCACTA ACCAGAAAAG AAAAAAAAAA CAAAAAGTGA AGTAAAGTTT AATGTAACGA TATGGTCTTT
CTTCACTTTT GTTTGTCTTA GAATAGAAAC TTAATTATGT ACTTATCTGT TGGGTAGAAC CTCCCTTCAT TTAAAAATGT
ACAACATGAT GCAATGCCAT GTCATTTTGC AGAGGTTTCT CTTGTAATTC AAGTATCCAT TCTCTCGTAT GTTTTTTGTA
CTCTCCTTCT CTAGTGTTTT TAAAATATAT TTATTTTGAT ACATTAAAAA A

>Vigan.11G087100.01
ATGATGAAGT TGAGGTCAAA GAGGTTTTCA AGAAGCAGCT CCAAGCTTGG CAACAATGGC AGCAAAGGAG CAGCATCATC
CCCAGAAAAG GATGCCAAAA ACAATGGTGA AATCAAGTGG GAACTTAGGC CTGGTGGCAT GCTTGTTCAG AAGAGGGAGA
GTAATAATAA CCAAAGTTCT GGAGAGGGAG TCATTGCTGT TAGAGTCTCC ACTGTCTCAC AATGGCATGA CATTTCCATT
GATGCCACTT CAACTTTTGG GGAACTAAAA CTGATTTTGT CACTGGTGAC AAATTTGGAT CCCAGAGAGC AGAGGCTTCT
GTTCAAGGGC AAAGAGAGGG AGGACAGTGA ATTCCTTCAC ATGGTTGGGG TGAGAGACAA GGACAAGGTT CTAATGCTTG
AGGATCCTGC AACAAAGGAG ATGAAGCTTC TTGGCATGGC AAGAGGCCAA CCCATTAACA ATACTTGCTG TACCATCGCT
GTATGA

>Vigan.11G087100.01
MMKLRSKRFS RSSSKLGNNG SKGAASSPEK DAKNNGEIKW ELRPGGMLVQ KRESNNNQSS GEGVIAVRVS TVSQWHDISI
DATSTFGELK LILSLVTNLD PREQRLLFKG KEREDSEFLH MVGVRDKDKV LMLEDPATKE MKLLGMARGQ PINNTCCTIA
V*