VIGGS:GBrowse

Vigan.11G088600.01

Basic Information:

Name:	Vigan.11G088600.01 Multiple alignment Variant Information
Position:	Chr11:10917534..10921266 (+ strand)
Length:	3733

Functional Information:

Description:	Similar to Uncharacterized protein. [I1N6V9, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:23.25,24.42,21.94,23.37,35.99,45.21,29.37,21.91
Arabidopsis thaliana homolog:	AT4G35860.1

Automatic updates:

Name:	NM_001255030 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABB1b-like (LOC100797461), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:10917534..10917764 (+ strand)
Length:	231
Type:	five_prime_UTR

Position:	Chr11:10917765..10917810 (+ strand)
Length:	46
Type:	CDS

Position:	Chr11:10917903..10918042 (+ strand)
Length:	140
Type:	CDS

Position:	Chr11:10919469..10919551 (+ strand)
Length:	83
Type:	CDS

Position:	Chr11:10920073..10920277 (+ strand)
Length:	205
Type:	CDS

Position:	Chr11:10920389..10920457 (+ strand)
Length:	69
Type:	CDS

Position:	Chr11:10920770..10920862 (+ strand)
Length:	93
Type:	CDS

Position:	Chr11:10920863..10921266 (+ strand)
Length:	404
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G088600.01
CTAAATTAAA AGAAAAGAAA TATTAAATGA TATTCAAGAC GCATTAAAGA AACAAGTGAT ACAAATACGT CACTTCTTGC
TTTGGTTGGG AATCAAACCC ACCATTTTCA CTGTGCATCA CTCTCTTCCT TCCTTCTTCG TCTTATTCTC CAACCCACAC
TAAAGCCTTC CTATTTTTGT TCTTTTCTCT GTTTTGCTTT TTCCAAACGG CGTCGCTTCA GAGGTTCAGC GATGTCGTAC
GACTACCTAT TCAAGTACAT CATCATCGGC GACACAGGTG TAGGGAAATC GTGTCTGCTC CTCCAATTCA CTGATAAGAG
GTTCCAACCT GTTCATGATC TCACCATTGG TGTTGAGTTT GGCGCTCGCA TGGTCACAAT TGATTCTCGA CCCATCAAGC
TTCAGATATG GGATACTGCT GGGCAAGAGT CCTTTAGATC CATCACAAGA TCTTACTATA GAGGAGCAGC CGGAGCACTT
CTAGTTTATG ACATTACAAG GAGAGACACA TTTAATCATT TAGCTAGTTG GCTGGAAGAT GCCCGGCAGC ATGCCAATCC
TAACATGAGC ATCATGCTCG TAGGGAACAA GTGTGACCTG TCTCATCGAA GAGCAGTGAG CAAAGAGGAG GGGGAGCAGT
TTGCAAAAGA AAATGGACTT CTGTTTTTGG AGGCTTCTGC TAGGACTGCT CAAAATGTGG AAGAGGCTTT TATAAGGACT
GCTGCAAAGA TTCTTCAGAA TATTCAGGAA GGTGTCTTTG ATGTGTCGAA TGAGTCATCT GGTATAAAAG TTGGCTATGG
ACGTCCCCAA GGTCAATCAG GAGGCAGAGA TGGAACTGTT TCTGCAAGGG GTGGGTGTTG TAACTGATTG AAGGGAAACC
AAATCTCAAT CTAATCCTTT TTTGCATCTA TTTCTGCCTC CTGTCTCAAC TGAGTGTATA CTCTTAGACT TGACATGGAA
CTTTTGGAGT ACCCTGCAAC TTCCTGTATA GATCTAATCT CAAAGGTGTT CTTGGAACAG ATTTGACTGC ATAGTTTTCA
GATCTACTAA ATGTTTAATG ATTGGCTGTT ATGTTCAAAA TGCCAGTTTC TTATAGTTTT GTTGTTATCT GCTACAATAT
TTACATGTTG TAGCTTTTTA GTAGGTACTA CCCAATGTTC CACTCAATGT TAAACATGCA TGAAGTTGTG TGGGTCCACC
ATGTGTACAA TTTATCAATC TTCAAAGAAT GTCTTTATAT ATGAAAAAGA TGAATGGGGT ATCCTAGAGA T

[show][hide][copy]CDS

>Vigan.11G088600.01
ATGTCGTACG ACTACCTATT CAAGTACATC ATCATCGGCG ACACAGGTGT AGGGAAATCG TGTCTGCTCC TCCAATTCAC
TGATAAGAGG TTCCAACCTG TTCATGATCT CACCATTGGT GTTGAGTTTG GCGCTCGCAT GGTCACAATT GATTCTCGAC
CCATCAAGCT TCAGATATGG GATACTGCTG GGCAAGAGTC CTTTAGATCC ATCACAAGAT CTTACTATAG AGGAGCAGCC
GGAGCACTTC TAGTTTATGA CATTACAAGG AGAGACACAT TTAATCATTT AGCTAGTTGG CTGGAAGATG CCCGGCAGCA
TGCCAATCCT AACATGAGCA TCATGCTCGT AGGGAACAAG TGTGACCTGT CTCATCGAAG AGCAGTGAGC AAAGAGGAGG
GGGAGCAGTT TGCAAAAGAA AATGGACTTC TGTTTTTGGA GGCTTCTGCT AGGACTGCTC AAAATGTGGA AGAGGCTTTT
ATAAGGACTG CTGCAAAGAT TCTTCAGAAT ATTCAGGAAG GTGTCTTTGA TGTGTCGAAT GAGTCATCTG GTATAAAAGT
TGGCTATGGA CGTCCCCAAG GTCAATCAGG AGGCAGAGAT GGAACTGTTT CTGCAAGGGG TGGGTGTTGT AACTGA

[show][hide][copy]PROTEIN

>Vigan.11G088600.01
MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTI DSRPIKLQIW DTAGQESFRS ITRSYYRGAA
GALLVYDITR RDTFNHLASW LEDARQHANP NMSIMLVGNK CDLSHRRAVS KEEGEQFAKE NGLLFLEASA RTAQNVEEAF
IRTAAKILQN IQEGVFDVSN ESSGIKVGYG RPQGQSGGRD GTVSARGGCC N*