GBrowse Details

Vigan.11G096400.01

Basic Information:
Name: Vigan.11G096400.01
Multiple alignment
Variant Information
Position: Chr11:12454894..12463943 (+ strand)
Length: 9050
Functional Information:
Description: Similar to Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1. [XP_007033392.1, Theobroma cacao]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Uncharacterised protein family UPF0121 (IPR005344)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:113.73,62.34,28.60,29.05,47.05,53.95,38.22,28.00
Arabidopsis thaliana homolog: AT3G02420.1
Automatic updates:
Name: NM_001253304 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100789872 (LOC100789872), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:12454894..12454993 (+ strand)
Length: 100
Type: five_prime_UTR
Position: Chr11:12454994..12455170 (+ strand)
Length: 177
Type: CDS
Position: Chr11:12455982..12456102 (+ strand)
Length: 121
Type: CDS
Position: Chr11:12456212..12456309 (+ strand)
Length: 98
Type: CDS
Position: Chr11:12461127..12461252 (+ strand)
Length: 126
Type: CDS
Position: Chr11:12461351..12461471 (+ strand)
Length: 121
Type: CDS
Position: Chr11:12461600..12461684 (+ strand)
Length: 85
Type: CDS
Position: Chr11:12462189..12462302 (+ strand)
Length: 114
Type: CDS
Position: Chr11:12462416..12462455 (+ strand)
Length: 40
Type: CDS
Position: Chr11:12463566..12463718 (+ strand)
Length: 153
Type: CDS
Position: Chr11:12463719..12463943 (+ strand)
Length: 225
Type: three_prime_UTR


>Vigan.11G096400.01
CTGCTGTGTG CGTTTACCAT AAGAAAATGA CCAAATATAT CTAAGGAATT ACAGACTGTG TGGTGTTGAA ACAGAATCAG
CGGAAGAAGA GTGTGGAAAA ATGGGAGAAG AGAGAGAAGA TACACAGAGG CTGAAGCGAA TAGCGGCGGA TTCGTACGAC
TACGACAATG ACTCTCGATG GCCTGATTAC TGGAGCAACG TCCTCATCCC TCCGCACATG GCCTCTCGTA ACGACGTTGT
TTCCCACTTC AAGCGCAAGT TCTACCAGCG CTACGTTGAT TCTGATCTGA TGGTGGAACC AATGTCAGTC GGTGCCAGTT
CATCCCAGCC TGCTCGTTCA TCAGCAACCT CATCAACGAC GCCCCCAACA AATAATCAAC CTCGTGCAAG AAGTTCTGCA
TCAACTAATA GAACATCGGG GACTACATCC TCAACTGCAG GTGCAGCACC TTTGCGCTGG GATCGGCAGA CTATTATGTT
TTCTGTCAAT GCTTGGGTGT TTGTTGTTGG TTTCCTAGCA ACCATTCCAC TGGTACCGAA GCATCTTTCT CATAGGGCTT
ATCGACTTTC TTTTCTGGGC ACTACTTGCT CATCTCTGTA CTCTTTGTAC TCGCAATATG GAAAGCCAAG AGCGTGGAAT
ATGCAGGCCT TGCAAGTTTA CTTTCAATCA ATAACTGCTT CAAACGATTT TATATACTTC ATCTTCTGCC TTACATTTGT
TACATCTCAT CTTTGCCTTA AATTTGCTTT AATACCTATC TTATGTTGGT CACTTGAACA TGTTGCCAAG TTCCTGAGAC
GGAATTTCAG TCGCTCGATG TTGTACAGGA AGTACTTGGA AGAGCCTTGT GTTTGGGTGG AGTCAAACAA CACTACCCTC
AATATACTGA CATCGCATGC TGAGATTGGA CTTGGATTCC TGCTTATCAT CTCATTGTTC TCGTGGCAGC GGAACATAAT
ACAAACATTC ATGTACTGGC AGCTTTTGAA GCTTATGTAT CATGTTCCTG TTACCGCCCC TTACCATCAA AGTGTCTGGG
CTCAAATTGG GAGGACGGTT AATCCTGTCA TCCAACGCCA CGTACCATTC TTGAAGGCTC CTGTAACTGC AATTCAAAGA
TGGTGGCTAA GGTAGAAAGC TTGGCTAAAA ATGGTTTCAT ATGAAGACCA AGTAAACATT TTTTGTTCCA TTTTCTTAAA
ATACAGTTTG ATTTCACATC AAGTGACCTG TTGGTTATAT TACAAAAGAC TGAAGTAGAT TGAGTTGAAT AATTGATCTA
ATCCTGAATG TTAGATTGAT TGAGCAGTGT GTTCTTTTAC ATTATAGCAT TATTCGTATA TGTTAATGTT TTAAATCCCA


>Vigan.11G096400.01
ATGGGAGAAG AGAGAGAAGA TACACAGAGG CTGAAGCGAA TAGCGGCGGA TTCGTACGAC TACGACAATG ACTCTCGATG
GCCTGATTAC TGGAGCAACG TCCTCATCCC TCCGCACATG GCCTCTCGTA ACGACGTTGT TTCCCACTTC AAGCGCAAGT
TCTACCAGCG CTACGTTGAT TCTGATCTGA TGGTGGAACC AATGTCAGTC GGTGCCAGTT CATCCCAGCC TGCTCGTTCA
TCAGCAACCT CATCAACGAC GCCCCCAACA AATAATCAAC CTCGTGCAAG AAGTTCTGCA TCAACTAATA GAACATCGGG
GACTACATCC TCAACTGCAG GTGCAGCACC TTTGCGCTGG GATCGGCAGA CTATTATGTT TTCTGTCAAT GCTTGGGTGT
TTGTTGTTGG TTTCCTAGCA ACCATTCCAC TGGTACCGAA GCATCTTTCT CATAGGGCTT ATCGACTTTC TTTTCTGGGC
ACTACTTGCT CATCTCTGTA CTCTTTGTAC TCGCAATATG GAAAGCCAAG AGCGTGGAAT ATGCAGGCCT TGCAAGTTTA
CTTTCAATCA ATAACTGCTT CAAACGATTT TATATACTTC ATCTTCTGCC TTACATTTGT TACATCTCAT CTTTGCCTTA
AATTTGCTTT AATACCTATC TTATGTTGGT CACTTGAACA TGTTGCCAAG TTCCTGAGAC GGAATTTCAG TCGCTCGATG
TTGTACAGGA AGTACTTGGA AGAGCCTTGT GTTTGGGTGG AGTCAAACAA CACTACCCTC AATATACTGA CATCGCATGC
TGAGATTGGA CTTGGATTCC TGCTTATCAT CTCATTGTTC TCGTGGCAGC GGAACATAAT ACAAACATTC ATGTACTGGC
AGCTTTTGAA GCTTATGTAT CATGTTCCTG TTACCGCCCC TTACCATCAA AGTGTCTGGG CTCAAATTGG GAGGACGGTT
AATCCTGTCA TCCAACGCCA CGTACCATTC TTGAAGGCTC CTGTAACTGC AATTCAAAGA TGGTGGCTAA GGTAG

>Vigan.11G096400.01
MGEEREDTQR LKRIAADSYD YDNDSRWPDY WSNVLIPPHM ASRNDVVSHF KRKFYQRYVD SDLMVEPMSV GASSSQPARS
SATSSTTPPT NNQPRARSSA STNRTSGTTS STAGAAPLRW DRQTIMFSVN AWVFVVGFLA TIPLVPKHLS HRAYRLSFLG
TTCSSLYSLY SQYGKPRAWN MQALQVYFQS ITASNDFIYF IFCLTFVTSH LCLKFALIPI LCWSLEHVAK FLRRNFSRSM
LYRKYLEEPC VWVESNNTTL NILTSHAEIG LGFLLIISLF SWQRNIIQTF MYWQLLKLMY HVPVTAPYHQ SVWAQIGRTV
NPVIQRHVPF LKAPVTAIQR WWLR*