GBrowse Details

Vigan.11G097000.01

Basic Information:
Name: Vigan.11G097000.01
Multiple alignment
Variant Information
Position: Chr11:12567417..12571231 (+ strand)
Length: 3815
Functional Information:
Description: Similar to mitochondrial import receptor subunit TOM20-like. [XP_004489624.1, Cicer arietinum]
GO: Biological Process: protein import into mitochondrial outer membrane (GO:0045040)
Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742)
Molecular Function: protein binding (GO:0005515)
InterPro: Plant specific mitochondrial import receptor subunit TOM20 (IPR010547)
Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:106.55,60.58,34.23,22.23,166.50,100.02,56.28,22.30
Automatic updates:
Name: NM_001248621 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499753 (LOC100499753), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial import receptor subunit TOM20-like (LOC100819858), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:12567417..12567597 (+ strand)
Length: 181
Type: five_prime_UTR
Position: Chr11:12567598..12567696 (+ strand)
Length: 99
Type: CDS
Position: Chr11:12567950..12568028 (+ strand)
Length: 79
Type: CDS
Position: Chr11:12568427..12568596 (+ strand)
Length: 170
Type: CDS
Position: Chr11:12568710..12568757 (+ strand)
Length: 48
Type: CDS
Position: Chr11:12569940..12570032 (+ strand)
Length: 93
Type: CDS
Position: Chr11:12570553..12570687 (+ strand)
Length: 135
Type: CDS
Position: Chr11:12570688..12571231 (+ strand)
Length: 544
Type: three_prime_UTR


>Vigan.11G097000.01
TATCTAAAAT TGAGTAATGG TTCGAATGTA ATTTGAGGAA AGAGAGGGCA ATTTCAGGTC TCCACGTAGG TCATTAGCAG
CTACGCTGCC CTCATAAGAG CAGCTGCAGA TTTCCATTCT AAAACCCAAA ACCCTAAAAG CGAGACAAAG CTCCCAAAGT
ATCTGTTGCT CTCAAGCTGC CATGGATTTG CAACAGGGTG AGTTTGATCG CCTCTTGTTC TTCGAGCACG CTCGTAAGGC
TGCAGAAGCC GAATACATCA AGAACCCTAT AGATGCCGAC AACTTAACAC GATGGGGTGG AGCTTTATTA GAATTGTCTC
AGTTTCAGAA CTTTCCTGAG TCGAAGAAAA TGACCCAAGA GGCTATTTCG AAGCTGGAGG AGGCGCTTGA GGTGAATCCC
AAGAAGCATG ACACCCTTTG GTGCCTTGGA AATGCTCACA CCTCGATGGC ATTTTTAAAT CCAGATCAGG AGGAGGCAAA
GGTTTATTTT GACAAGGCAG CTCAGTACTT TCGACAAGCT GTTGATGAGG ATCCTTCAAA TGAACTTTAC CTTAAATCAT
TGGAAGTGGC GGCTAAGGCT CCTGAGCTTT ATCTAGAAAT TCGTCAGCAT GGATTGGGTC AGCAGCAGCA GGCAGCAACA
GCTGGATCTT CTACATCTTC GGCTACAAAG ACGCAGAAGA AAAAGAAGAG CAGTGATCTG AAGTATGACA TATTTGGATG
GATAATTCTG GCAGTTGGCA TTGTTGCATG GGTGGGATTC GCAAAATCGA ACCTGCCTCC ACCTCCTCCT CCACCTCCTC
GATAAGTGAA ACCATTTGAT TCTATCTCAT ACATTATTGA TTATTGAGAA TGATATTTAA TTTGGTTCAG TGCCGTTTGT
TTACCTTTTG ACAGCAGTAA TGTTTGTAAT GATGTAGCCA TTGGCGTATC TTATCCCTCA TACGAAATTT TTTCCTACTG
TGGGTTGAGC GGTTAAATAT GTCCGGCTTA GATCTTTGCT AGTTTTGCAG AATCAAAAGC ATCGCCTTCA GTCAAGTATT
GAATATAATA AGAATTTTAC GCCAAGGTTT CGGTTTTTCA TTTATGGCTC CGCTTCAATA GTATTGGTGC CAGTTTGGTA
AATAGGCCTT ATGACATGCT TTAATAAATT TGTTATTGAG AATTTAGTTT TGGATCTGTA TGGGAAAATT TCACTTCCAC
TGTCTTTTAT TGGAACGAAA AATAAGCAAA ATGGAGAAGT CTTTTTAGAA GCTAAAATTG CGTACCACCA AGTTAAAAAT
AAAGAAGATA GAGAAGAGAT ATTTTTAACA AATAAGATTG TGTAAACTGA TCTTAATTTT AGAAGTTCG

>Vigan.11G097000.01
ATGGATTTGC AACAGGGTGA GTTTGATCGC CTCTTGTTCT TCGAGCACGC TCGTAAGGCT GCAGAAGCCG AATACATCAA
GAACCCTATA GATGCCGACA ACTTAACACG ATGGGGTGGA GCTTTATTAG AATTGTCTCA GTTTCAGAAC TTTCCTGAGT
CGAAGAAAAT GACCCAAGAG GCTATTTCGA AGCTGGAGGA GGCGCTTGAG GTGAATCCCA AGAAGCATGA CACCCTTTGG
TGCCTTGGAA ATGCTCACAC CTCGATGGCA TTTTTAAATC CAGATCAGGA GGAGGCAAAG GTTTATTTTG ACAAGGCAGC
TCAGTACTTT CGACAAGCTG TTGATGAGGA TCCTTCAAAT GAACTTTACC TTAAATCATT GGAAGTGGCG GCTAAGGCTC
CTGAGCTTTA TCTAGAAATT CGTCAGCATG GATTGGGTCA GCAGCAGCAG GCAGCAACAG CTGGATCTTC TACATCTTCG
GCTACAAAGA CGCAGAAGAA AAAGAAGAGC AGTGATCTGA AGTATGACAT ATTTGGATGG ATAATTCTGG CAGTTGGCAT
TGTTGCATGG GTGGGATTCG CAAAATCGAA CCTGCCTCCA CCTCCTCCTC CACCTCCTCG ATAA

>Vigan.11G097000.01
MDLQQGEFDR LLFFEHARKA AEAEYIKNPI DADNLTRWGG ALLELSQFQN FPESKKMTQE AISKLEEALE VNPKKHDTLW
CLGNAHTSMA FLNPDQEEAK VYFDKAAQYF RQAVDEDPSN ELYLKSLEVA AKAPELYLEI RQHGLGQQQQ AATAGSSTSS
ATKTQKKKKS SDLKYDIFGW IILAVGIVAW VGFAKSNLPP PPPPPPR*