GBrowse Details

Vigan.11G101100.01

Basic Information:
Name: Vigan.11G101100.01
Multiple alignment
Variant Information
Position: Chr11:13512573..13518030 (+ strand)
Length: 5458
Functional Information:
Description: Similar to signal recognition particle 19 kDa protein-like. [XP_004488192.1, Cicer arietinum]
GO: Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614)
Cellular Component: signal recognition particle (GO:0048500)
Molecular Function: 7S RNA binding (GO:0008312)
InterPro: Signal recognition particle, SRP19 subunit (IPR002778)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.03,39.98,16.83,14.98,32.32,33.84,22.27,18.06
Arabidopsis thaliana homolog: AT1G48160.1
Automatic updates:
Name: NM_001248869 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500027 (LOC100500027), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253124 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max signal recognition particle 19 kDa protein-like (LOC100801614), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:13512573..13512716 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr11:13512717..13512893 (+ strand)
Length: 177
Type: CDS
Position: Chr11:13512968..13513067 (+ strand)
Length: 100
Type: CDS
Position: Chr11:13517645..13517778 (+ strand)
Length: 134
Type: CDS
Position: Chr11:13517779..13518030 (+ strand)
Length: 252
Type: three_prime_UTR


>Vigan.11G101100.01
CAGGATTCGA GAATTGGGCC CGACAATATC CTGGTTTCTC TTCGTCACCT TCTGTCTTTC TTCTTCTCAT TTGGGTGGGT
GCCATAGCAT AAGCAAAAGT AAAATATTCA GTGTTCAGTG TTAGATTTGG CGATTCTGCA AACCATGGAT GCCCAGTTGC
CGAACATAAA AAAATGGATT GTGATGTATC CTGTTTACAT CAATTCCAAA AAAACAATGG CAGAAGGACG ACGGATCGCG
GTCGCCAAAG CTTGCGAAAA CCCTACTTGT GCCGAAATCG GTGATTGCTG TAGCTATCTC AAGCTTCCTT TTGCAATTGA
GATAGACAAG GCGTACCCTC GCGATTTCAT GCAAAGAGGG CGCGTGAGGG TGTTGCTGAA GACGGAAGAT GGGACACTCA
TTAACCCCTC CATCTCGTCC CGAAAGCAAC TGATGTTACG GGTTGCAGAG ATGGTGCCTA GGCATCATGG AAGAACCAAG
AAGCAAGAGA CTGCATCAAC ATCAACTACT GGACCTTCCC AAAAATCTGG AAAGGGTGGG AAAAAGAGGA GATAATTTAT
GTTTCAAACG TTGTTGTACA TGTTTGAGTG TTTTGTCAGA TGTACTTTAT ATGATATGAC CAACTACCCC AACCAAGTTA
AAAAATTTAG GCATTCTTAC ACTCGGGCCT CTATTTTGCG TATTGGACAA TTTTTTCATA GCCCTTCATT TGGGAGGGGT
GGGACACATT TCTGAAGTTG TTAAGGGGTT ACTTCTGCAA TCAAAATTTT GATGTGATTT ATTTGAACAC TTATTCTATT
TGATATT

>Vigan.11G101100.01
ATGGATGCCC AGTTGCCGAA CATAAAAAAA TGGATTGTGA TGTATCCTGT TTACATCAAT TCCAAAAAAA CAATGGCAGA
AGGACGACGG ATCGCGGTCG CCAAAGCTTG CGAAAACCCT ACTTGTGCCG AAATCGGTGA TTGCTGTAGC TATCTCAAGC
TTCCTTTTGC AATTGAGATA GACAAGGCGT ACCCTCGCGA TTTCATGCAA AGAGGGCGCG TGAGGGTGTT GCTGAAGACG
GAAGATGGGA CACTCATTAA CCCCTCCATC TCGTCCCGAA AGCAACTGAT GTTACGGGTT GCAGAGATGG TGCCTAGGCA
TCATGGAAGA ACCAAGAAGC AAGAGACTGC ATCAACATCA ACTACTGGAC CTTCCCAAAA ATCTGGAAAG GGTGGGAAAA
AGAGGAGATA A

>Vigan.11G101100.01
MDAQLPNIKK WIVMYPVYIN SKKTMAEGRR IAVAKACENP TCAEIGDCCS YLKLPFAIEI DKAYPRDFMQ RGRVRVLLKT
EDGTLINPSI SSRKQLMLRV AEMVPRHHGR TKKQETASTS TTGPSQKSGK GGKKRR*