GBrowse Details

Vigan.11G103800.01

Basic Information:
Name: Vigan.11G103800.01
Multiple alignment
Variant Information
Position: Chr11:14060558..14063345 (+ strand)
Length: 2788
Functional Information:
Description: Similar to Cytochrome b-c1 complex subunit Rieske, mitochondrial. [V7C495, Phaseolus vulgaris]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: membrane (GO:0016020)
Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on diphenols and related substances as donors (GO:0016679)
Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537)
InterPro: Ubiquinol cytochrome reductase, transmembrane domain (IPR004192)
Rieske iron-sulphur protein, C-terminal (IPR005805)
Ubiquinol-cytochrome c reductase, iron-sulphur subunit (IPR006317)
Rieske iron-sulphur protein (IPR014349)
Rieske [2Fe-2S] iron-sulphur domain (IPR017941)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.21,30.22,2.37,2.53,6.80,2.60,0.18,3.07
Automatic updates:
Name: NM_001254118 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome b-c1 complex subunit Rieske-2, mitochondrial-like (LOC100798615), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:14060558..14060935 (+ strand)
Length: 378
Type: five_prime_UTR
Position: Chr11:14060936..14061092 (+ strand)
Length: 157
Type: CDS
Position: Chr11:14062186..14062829 (+ strand)
Length: 644
Type: CDS
Position: Chr11:14062830..14063345 (+ strand)
Length: 516
Type: three_prime_UTR


>Vigan.11G103800.01
GAAAAATATT ATTTTTAGAA TACAGAAGTC CTGGAAAAAA ACATGCAGTA GTGCTGCAAG AAGAAAACTT CGAAATATAG
GGTGCTGCAA GAAAACTCAA GAAGTGATGC CTAGATTTAG ACCCAAAAAG ATGATGATAA AAAAAAAAAA AACGAATGGA
GCATTCTGTC AAAATTAGAC GATTAAGCAA GAAGCCGACA TTGAAGGAAC GGTTCTGACT TTTCCTTCTC CCCTTAATTG
GAAAAGCCAC CTTCAGAGAC ACACTCCGAT CCTCTCTACA ACTTCAACTT TACCACTTCC AATTTTCTGC AACAAACACA
AAGCACTCGT AGAAGAGAAA CAAGAAGAAG AAGAATAAGG AGAAGAAGGA AGAACACCAT GTTGAGGCTT GCATTTAAGA
GACTGTCTTC TCTTTCCTCT CCCTCCTTCC GACCCTACCA CGCTGCTTCC GCTTTCCTCT CCCCAAACGT CGTCGTTCAT
GATTCCAGAT CCCTCCCTTC CTCTCACCTC ACCAATTTCC TTCTTCCCTT CAGAGGTTTT ACTACTGAAT CACTGAGCTA
CACACAAAAA GACAGCATTA TTTCTGAGAT TCCAGCAACT ATGGCTGCTG TTAAGAACCC GACCTCTACG ATTGTCTATG
ATGAGCACAA CCATGAAAGG TTTCCCCCAG GTGACCCCAG CAAGAGGGCA TTTGCTTACT TTGTCCTTAC TGGTGGTAGG
TTTGCTTATG CCTCTCTGGT TCGTCTCCTA ATCCTCAAGT TTGTGCTTAG CATGTCTGCT AGTAAGGATG TTCTTGCTCT
GGCTTCACTT GAGGTTGATC TCTCCAGCAT TGAGCCTGGC ACCACGGTGA CCGTAAAGTG GCGTGGAAAA CCGGTGTTCA
TCAGGCGCCG GACAGAGGAT GATATCAAGC TGGCAAACAG TGTTGATGTT CTATCTCTTC GTGATCCCCA ACAGGATGCA
GAGAGGGTGA AGGACCCACA ATGGCTCATT GTAATTGGGG TTTGCACACA TTTGGGCTGC ATTCCATTGC CAAATGCTGG
TGACTTTGGT GGGTGGTTTT GCCCATGCCA TGGATCACAT TATGATATTT CAGGCAGAAT TAGGAAGGGA CCAGCACCAT
ACAATCTGGA GGTTCCTACC TATTCCTTCT TGGATGAGAA CACGTTATTG ATTGGTTGAA AATGGTTGTT CTGCATACAA
ATGAGATGAG TTTACCAATT GGGTTGAGTA AGTTACAATG TGCCTTAAAG ACAGTCTTTT ACCTTACAGT ACTTGTTGAG
TCTGTTTGGC AATTGGTTTG TGTAACTTGG AAATTGTAAC TGTTACCTTT TGGCGAGACC TTTATAAAAA ATCGTCAGGC
TTTTTGCTTA GCTTGCGACA AGTTCAGGAA TCTCGCATCA TATGTATAAC AATTTTAATA TGATTTTGAT TATTAGCTAT
TGTCAAATAC AGAATAAAAT TGATCTCAAC ATTCTTTAGC ATTCTGATTC TACTGCCTGA AGAAATAGGT CATCTTTCAA
AAACGCCTTT AACATACACC ATTCCTTTTT CACTGAATTT GAGTTCCTTC CTCATTTGCT CGACTTGTTG ATCATCACCT
TGGGCAATGA TCTCTGATAA GTTTCCATCA TCTGCAACTA TTATTTTCAC TTTAATCTGC TCCTTTCTGG ATGCCCGAGT
CCAGTAATAA ACGCC

>Vigan.11G103800.01
ATGTTGAGGC TTGCATTTAA GAGACTGTCT TCTCTTTCCT CTCCCTCCTT CCGACCCTAC CACGCTGCTT CCGCTTTCCT
CTCCCCAAAC GTCGTCGTTC ATGATTCCAG ATCCCTCCCT TCCTCTCACC TCACCAATTT CCTTCTTCCC TTCAGAGGTT
TTACTACTGA ATCACTGAGC TACACACAAA AAGACAGCAT TATTTCTGAG ATTCCAGCAA CTATGGCTGC TGTTAAGAAC
CCGACCTCTA CGATTGTCTA TGATGAGCAC AACCATGAAA GGTTTCCCCC AGGTGACCCC AGCAAGAGGG CATTTGCTTA
CTTTGTCCTT ACTGGTGGTA GGTTTGCTTA TGCCTCTCTG GTTCGTCTCC TAATCCTCAA GTTTGTGCTT AGCATGTCTG
CTAGTAAGGA TGTTCTTGCT CTGGCTTCAC TTGAGGTTGA TCTCTCCAGC ATTGAGCCTG GCACCACGGT GACCGTAAAG
TGGCGTGGAA AACCGGTGTT CATCAGGCGC CGGACAGAGG ATGATATCAA GCTGGCAAAC AGTGTTGATG TTCTATCTCT
TCGTGATCCC CAACAGGATG CAGAGAGGGT GAAGGACCCA CAATGGCTCA TTGTAATTGG GGTTTGCACA CATTTGGGCT
GCATTCCATT GCCAAATGCT GGTGACTTTG GTGGGTGGTT TTGCCCATGC CATGGATCAC ATTATGATAT TTCAGGCAGA
ATTAGGAAGG GACCAGCACC ATACAATCTG GAGGTTCCTA CCTATTCCTT CTTGGATGAG AACACGTTAT TGATTGGTTG
A

>Vigan.11G103800.01
MLRLAFKRLS SLSSPSFRPY HAASAFLSPN VVVHDSRSLP SSHLTNFLLP FRGFTTESLS YTQKDSIISE IPATMAAVKN
PTSTIVYDEH NHERFPPGDP SKRAFAYFVL TGGRFAYASL VRLLILKFVL SMSASKDVLA LASLEVDLSS IEPGTTVTVK
WRGKPVFIRR RTEDDIKLAN SVDVLSLRDP QQDAERVKDP QWLIVIGVCT HLGCIPLPNA GDFGGWFCPC HGSHYDISGR
IRKGPAPYNL EVPTYSFLDE NTLLIG*