VIGGS:GBrowse

Vigan.11G108800.01

Basic Information:

Name:	Vigan.11G108800.01 Multiple alignment Variant Information
Position:	Chr11:15273415..15277760 (+ strand)
Length:	4346

Functional Information:

Description:	Similar to Uncharacterized protein. [E3NYP3, Glycine max]
InterPro:	Phosphatidylethanolamine-binding, conserved site (IPR001858)
InterPro:	Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,6.38,36.02,0.00,6.99,0.03,0.37
Arabidopsis thaliana homolog:	AT1G65480.1

Automatic updates:

Name:	KJ179953 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max flowering locus T-like protein 2b mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001253256 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein FLOWERING LOCUS T (FT2A), mRNA.
PubMed ID:	31240772 NCBI(pubmed)
	31035293 NCBI(pubmed)
	30894121 NCBI(pubmed)
	29120038 NCBI(pubmed)
	28509421 NCBI(pubmed)
	28338712 NCBI(pubmed)
	24845624 NCBI(pubmed)
	24155962 NCBI(pubmed)
	22195028 NCBI(pubmed)
	20864544 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001289356 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein FLOWERING LOCUS T-like (FT2B), mRNA.
PubMed ID:	30894121 NCBI(pubmed)
	29120038 NCBI(pubmed)
	28244155 NCBI(pubmed)
	28338712 NCBI(pubmed)
	20864544 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:15273415..15273603 (+ strand)
Length:	189
Type:	five_prime_UTR

Position:	Chr11:15273604..15273807 (+ strand)
Length:	204
Type:	CDS

Position:	Chr11:15273941..15274002 (+ strand)
Length:	62
Type:	CDS

Position:	Chr11:15274104..15274144 (+ strand)
Length:	41
Type:	CDS

Position:	Chr11:15277253..15277479 (+ strand)
Length:	227
Type:	CDS

Position:	Chr11:15277480..15277760 (+ strand)
Length:	281
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G108800.01
CAAAAACTTG CGGGTCCCCA AGAAAATTCA GCTTTTTCTG TCTTGTGTGC TAGGACGAAG ATCTTTTAAT TATTTTGAAA
GGGAAAAGAC GTGGATTGAA AAGGTATTGA GTCGAGTATA AATAGAGAGA ACCTGGTAGG TTGTCTGATA ACAACGCAAG
TTGTATTATT GTTCTGAGGA AACTGATTGA TGATGCCTGG AGGAAGTAGG GACCCTCTGG TTGTAGGGCG TGTGATTGGG
GATGTGTTGG ACCCCTTTCA ATGTTCCATT CCCATGAGGG TCAGCTACAA TAACAAAGAT GTCACCAATG GATGTGAATT
CAAACCTTCA CAAGTTTTCA ACCAACCCAG AATAACTGTC GGTGGAGATG ATCTCAGGAA CTTCTATACC TTGATCGCAG
TTGATCCCGA TGCACCCAGT CCGAGTGACC CTAATTTGAG AGAATACCTC CATTGGTTGG TGACTGATAT TCCTGCAACA
ACGGGACCTA GTTTCGGTCA TGAGGTTGTA ACATATGAGA GTCCACGACC CATGATGGGG ATTCATCGTA TCGTGTTTGT
GTTGTTTCGC CAATTGGGTA GGGAGACTGT GTATGCACCA GGATGGCGCC AGAATTTCAA CACCAGAGAA TTTGCTGAAC
TTTACAACCT TGGATTGCCC GTTGCGGCTG TCTATTTCAA CATTCAGAGG GAATCTGGTT CTGGTGGAAG GAGATTATAT
TAACAAAACA GAAAACTTTA TAGTATACAA CAAAATAAAG TACTAATTAA ACTTCCTTGA GGGTTTCGGA AATATTCGCA
ATGATCACCT GCTAAATGAG TGCCTCTTTA ACTTAAAATC AACATAGACC AAATAAATCA TTTGCTCGGT TGGATAGCAC
CAAGAACTCT ATATATGTAT CCATGAATGG AACCGAACTA TCCTTCTTGC TTCTTCTTTT TTTTCTTTTC ATTTATGTAT
TTTCTATTTA AAAAATGTTA TAATATAAAA GTGTGTTAGA AATA

[show][hide][copy]CDS

>Vigan.11G108800.01
ATGATGCCTG GAGGAAGTAG GGACCCTCTG GTTGTAGGGC GTGTGATTGG GGATGTGTTG GACCCCTTTC AATGTTCCAT
TCCCATGAGG GTCAGCTACA ATAACAAAGA TGTCACCAAT GGATGTGAAT TCAAACCTTC ACAAGTTTTC AACCAACCCA
GAATAACTGT CGGTGGAGAT GATCTCAGGA ACTTCTATAC CTTGATCGCA GTTGATCCCG ATGCACCCAG TCCGAGTGAC
CCTAATTTGA GAGAATACCT CCATTGGTTG GTGACTGATA TTCCTGCAAC AACGGGACCT AGTTTCGGTC ATGAGGTTGT
AACATATGAG AGTCCACGAC CCATGATGGG GATTCATCGT ATCGTGTTTG TGTTGTTTCG CCAATTGGGT AGGGAGACTG
TGTATGCACC AGGATGGCGC CAGAATTTCA ACACCAGAGA ATTTGCTGAA CTTTACAACC TTGGATTGCC CGTTGCGGCT
GTCTATTTCA ACATTCAGAG GGAATCTGGT TCTGGTGGAA GGAGATTATA TTAA

[show][hide][copy]PROTEIN

>Vigan.11G108800.01
MMPGGSRDPL VVGRVIGDVL DPFQCSIPMR VSYNNKDVTN GCEFKPSQVF NQPRITVGGD DLRNFYTLIA VDPDAPSPSD
PNLREYLHWL VTDIPATTGP SFGHEVVTYE SPRPMMGIHR IVFVLFRQLG RETVYAPGWR QNFNTREFAE LYNLGLPVAA
VYFNIQRESG SGGRRLY*