GBrowse Details

Vigan.11G114600.01

Basic Information:
Name: Vigan.11G114600.01
Multiple alignment
Variant Information
Position: Chr11:16209504..16217819 (+ strand)
Length: 8316
Functional Information:
Description: Similar to replication factor C subunit 3-like isoform X1. [XP_003524588.1, Glycine max]
GO: Biological Process: DNA replication (GO:0006260)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: AAA+ ATPase domain (IPR003593)
DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (IPR008921)
Replication factor C, C-terminal domain (IPR013748)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.06,5.92,14.15,6.75,19.96,12.19,15.42,8.24
Arabidopsis thaliana homolog: AT5G27740.1
Automatic updates:
Name: NM_001254135 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max replication factor C subunit 3-like (LOC100818329), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:16209504..16209576 (+ strand)
Length: 73
Type: five_prime_UTR
Position: Chr11:16209577..16209660 (+ strand)
Length: 84
Type: CDS
Position: Chr11:16209746..16209856 (+ strand)
Length: 111
Type: CDS
Position: Chr11:16209999..16210031 (+ strand)
Length: 33
Type: CDS
Position: Chr11:16210518..16210686 (+ strand)
Length: 169
Type: CDS
Position: Chr11:16211371..16211552 (+ strand)
Length: 182
Type: CDS
Position: Chr11:16213828..16213964 (+ strand)
Length: 137
Type: CDS
Position: Chr11:16214106..16214204 (+ strand)
Length: 99
Type: CDS
Position: Chr11:16214390..16214459 (+ strand)
Length: 70
Type: CDS
Position: Chr11:16216844..16216918 (+ strand)
Length: 75
Type: CDS
Position: Chr11:16217176..16217221 (+ strand)
Length: 46
Type: CDS
Position: Chr11:16217434..16217492 (+ strand)
Length: 59
Type: CDS
Position: Chr11:16217493..16217819 (+ strand)
Length: 327
Type: three_prime_UTR


>Vigan.11G114600.01
CATTATTTGT GCCCTCGCTA TATCAGATAT CAGTAGAAGA ACACACAAGT ACCACGACCA ACCCTTACCC AAGATGTTGT
GGGTAGACAA ATATCGTCCC AAAACCCTCG ACCATGTTAT GGTCCACACC GATATCGCTC ACAATCTCAA GAAATTGGTG
AAGGAACAAG ATTGCCCCCA TTTACTCTTC TATGGCCCTT CTGGCTCTGG CAAGAAAACC CTAATCATGG CCGTTCTCCG
CCAAATGTTT GGATCTGGTG CTGAAAAGGT GAAGGTGGAA AATAGGACGT GGAAAGTGGA TGCTGGGAGT AGATCTCTTG
ATATAGAGTT GACAACATTG TCAAGTGCCA ACCACATTGA AATAAGTCCG AGTGATGCAG GATTTCAAGA CAGATATGTT
GTTCAAGAGG TAATCAAAGA AATGGCTAAG AATAGACCCA TTGATACTAA GGGGAAGAAA GGATTTAAAG TACTCGTGCT
CAATGATGTT GACAAACTCT CTAGAGAGGC TCAACATTCT CTTCGGAGAA CAATGGAAAA ATACAGTGCT TATTGCAGAC
TAATTCTATG CTGCAATAGT TCTTCTAGAG TCACAGAAGC AATCCGCTCT AGATGTCTCA ATGTAAGGAT AAACGCACCA
AGTGAAGAAC AGATTCTTGA AGTTTTAGAG CTCATTGGTA GGAAAGAAGA GCTGCAACTT CCTGCTGGTT TTGCTGCTCG
CATTGCAGAG AAATCAAATC GGAATTTAAG GAGGGCAATA TTGACATTTG AGACTTGTCG TGTGCAACAG TATCCTTTCA
CTAACAAACA AACAATTCCT CCAATGGACT GGGAAGAACA TATTTCTGAA ATTGCATCTG ACATAATGAA AGAACAGAGC
CCCAAAAGGT TGTTTCTAGT TCGAGGGAAG ATTTATGACT TGCTAATAAA TTGTATTCCT CCGGAGATGG TTTTGAAGAG
GCTTCTTCAT GAGCTGTTGA GGAAGCTGGA TGCAGAGCTA AAGCATGAAG TATGTCATTG GGCTGCATAT TATGAACATC
GGATGCGTCT TGGACAAAAG GCAATCTTTC ACATCGAAGC ATTTGTGGCC AAGTTCATGA GCATTTATAA ATCCTTCCTT
ATTGCAACTT TCGGCTGAAG GTGAAGAGGA TGGTATACTT TAAAGTGATT CAACATGTTA AATGAATTGT GTACGGTAAA
CAACTTACAA AATGGAATTT TATCATCCTG TATGCCGCAA TTGTTACAGA ATGATGTTTT GATTTGCAAA GGTGCTAATG
TTTTACTAAA TTGCGTGGAC TGTGCATGAA GCTAGACACT CCTGCTTAAC CCAGCGTCAA ATATTTATCA ATTTAGTTTT
GGAATGCCTG CCGGTATTAA TACTACTGGC TTCATAATTT GACACTATTA TAAATATCTT GGGTCCTTGA TCTAATGTAA
GTTAAATTTT AGGTGTTAAA AGCGT

>Vigan.11G114600.01
ATGTTGTGGG TAGACAAATA TCGTCCCAAA ACCCTCGACC ATGTTATGGT CCACACCGAT ATCGCTCACA ATCTCAAGAA
ATTGGTGAAG GAACAAGATT GCCCCCATTT ACTCTTCTAT GGCCCTTCTG GCTCTGGCAA GAAAACCCTA ATCATGGCCG
TTCTCCGCCA AATGTTTGGA TCTGGTGCTG AAAAGGTGAA GGTGGAAAAT AGGACGTGGA AAGTGGATGC TGGGAGTAGA
TCTCTTGATA TAGAGTTGAC AACATTGTCA AGTGCCAACC ACATTGAAAT AAGTCCGAGT GATGCAGGAT TTCAAGACAG
ATATGTTGTT CAAGAGGTAA TCAAAGAAAT GGCTAAGAAT AGACCCATTG ATACTAAGGG GAAGAAAGGA TTTAAAGTAC
TCGTGCTCAA TGATGTTGAC AAACTCTCTA GAGAGGCTCA ACATTCTCTT CGGAGAACAA TGGAAAAATA CAGTGCTTAT
TGCAGACTAA TTCTATGCTG CAATAGTTCT TCTAGAGTCA CAGAAGCAAT CCGCTCTAGA TGTCTCAATG TAAGGATAAA
CGCACCAAGT GAAGAACAGA TTCTTGAAGT TTTAGAGCTC ATTGGTAGGA AAGAAGAGCT GCAACTTCCT GCTGGTTTTG
CTGCTCGCAT TGCAGAGAAA TCAAATCGGA ATTTAAGGAG GGCAATATTG ACATTTGAGA CTTGTCGTGT GCAACAGTAT
CCTTTCACTA ACAAACAAAC AATTCCTCCA ATGGACTGGG AAGAACATAT TTCTGAAATT GCATCTGACA TAATGAAAGA
ACAGAGCCCC AAAAGGTTGT TTCTAGTTCG AGGGAAGATT TATGACTTGC TAATAAATTG TATTCCTCCG GAGATGGTTT
TGAAGAGGCT TCTTCATGAG CTGTTGAGGA AGCTGGATGC AGAGCTAAAG CATGAAGTAT GTCATTGGGC TGCATATTAT
GAACATCGGA TGCGTCTTGG ACAAAAGGCA ATCTTTCACA TCGAAGCATT TGTGGCCAAG TTCATGAGCA TTTATAAATC
CTTCCTTATT GCAACTTTCG GCTGA

>Vigan.11G114600.01
MLWVDKYRPK TLDHVMVHTD IAHNLKKLVK EQDCPHLLFY GPSGSGKKTL IMAVLRQMFG SGAEKVKVEN RTWKVDAGSR
SLDIELTTLS SANHIEISPS DAGFQDRYVV QEVIKEMAKN RPIDTKGKKG FKVLVLNDVD KLSREAQHSL RRTMEKYSAY
CRLILCCNSS SRVTEAIRSR CLNVRINAPS EEQILEVLEL IGRKEELQLP AGFAARIAEK SNRNLRRAIL TFETCRVQQY
PFTNKQTIPP MDWEEHISEI ASDIMKEQSP KRLFLVRGKI YDLLINCIPP EMVLKRLLHE LLRKLDAELK HEVCHWAAYY
EHRMRLGQKA IFHIEAFVAK FMSIYKSFLI ATFG*