GBrowse Details

Vigan.11G124500.01

Basic Information:
Name: Vigan.11G124500.01
Multiple alignment
Variant Information
Position: Chr11:18822388..18826479 (+ strand)
Length: 4092
Functional Information:
Description: Similar to Uncharacterized protein. [C6SX47, Glycine max]
InterPro: Transmembrane protein 18 (IPR026721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.69,6.04,14.75,8.43,14.78,11.27,20.28,10.65
Arabidopsis thaliana homolog: AT1G34350.2
Automatic updates:
Name: NM_001250187 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527513 (LOC100527513), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251672 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305910 (LOC100305910), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:18822388..18822686 (+ strand)
Length: 299
Type: five_prime_UTR
Position: Chr11:18822687..18822827 (+ strand)
Length: 141
Type: CDS
Position: Chr11:18824083..18824188 (+ strand)
Length: 106
Type: CDS
Position: Chr11:18826025..18826173 (+ strand)
Length: 149
Type: CDS
Position: Chr11:18826267..18826362 (+ strand)
Length: 96
Type: CDS
Position: Chr11:18826363..18826479 (+ strand)
Length: 117
Type: three_prime_UTR


>Vigan.11G124500.01
GGTTGAGAGA TGTTTGTCAA ATAATTTTTT TCTTAACAAG GTTATTTTAG TCATTTAACA AAGATGGTAG GTGTGGGAAA
AAGGTATGAA GCAAAAGGCA TCTATTTTGT TGGGCATGAC AAAGGCCCGA TCCAATAAAA GGCCCAAAAA GAATGTTTCG
AGAAAGAAAA AAGCAACTAA CATATCAGTT TTGACGAAGG GAAAGTTCGG GCATAAGAAA ACCTCTTGCA GTGTATGAAC
AGGACTTGAA TCGGGGTACT GCATTGTTTT GTGAGACAAA AATTTAGAGT GTTAGAAGAA TGGAGGAACT AAAATCTGCT
ATGGAGGAGC ACATGGAGCT TATGGTAGAT CTTGTTCAGA AGTTCTCCAC AGATATTCGT GCTGGCTTTA TCCCCGCTTA
TGATAACTTT ATGGGTTTCT TCCATGCCAT TGACTGGAAG GAACCATGGA TAATGGGATT AGCAGGATTC CATGTTGTGT
TGCTGCTTGT AGTTATCATC TCTAGAAAGA AAACGAACTT TCAAATGTTT TTATTCCTTT TGACATTGGC TGGTGTATAT
CTTGCTGAGC CTCTGAACAA AATTATGGGT AAAAACTGGA AAAGCTTCTC TGGTCAGAAC TACTTTGATC CCAGTGGGCT
ATTTATGTCA GTTCTTTGGT CTGGACCTCT TCTTATCATT TCTATGATAA TCTTGGTCAA TACACTCTTC TCCTTATGTT
ACTTGATTGT TAGGTGGAAA AGAGCTGAAC TGAGACATCG TGCAAGGGCT GCTCGTAACA AACAAGAGTA GTTCATGCTT
GGCAATGTAA TAATAAGGTT TTGCACAAGA ATTTTGTTTT TCTTTTTTAA GATCTGCTTA TTTAGTATTT TTATTATTTC
TAGTTATGTT TGTGTACTCT ATTTACGG

>Vigan.11G124500.01
ATGGAGGAAC TAAAATCTGC TATGGAGGAG CACATGGAGC TTATGGTAGA TCTTGTTCAG AAGTTCTCCA CAGATATTCG
TGCTGGCTTT ATCCCCGCTT ATGATAACTT TATGGGTTTC TTCCATGCCA TTGACTGGAA GGAACCATGG ATAATGGGAT
TAGCAGGATT CCATGTTGTG TTGCTGCTTG TAGTTATCAT CTCTAGAAAG AAAACGAACT TTCAAATGTT TTTATTCCTT
TTGACATTGG CTGGTGTATA TCTTGCTGAG CCTCTGAACA AAATTATGGG TAAAAACTGG AAAAGCTTCT CTGGTCAGAA
CTACTTTGAT CCCAGTGGGC TATTTATGTC AGTTCTTTGG TCTGGACCTC TTCTTATCAT TTCTATGATA ATCTTGGTCA
ATACACTCTT CTCCTTATGT TACTTGATTG TTAGGTGGAA AAGAGCTGAA CTGAGACATC GTGCAAGGGC TGCTCGTAAC
AAACAAGAGT AG

>Vigan.11G124500.01
MEELKSAMEE HMELMVDLVQ KFSTDIRAGF IPAYDNFMGF FHAIDWKEPW IMGLAGFHVV LLLVVIISRK KTNFQMFLFL
LTLAGVYLAE PLNKIMGKNW KSFSGQNYFD PSGLFMSVLW SGPLLIISMI ILVNTLFSLC YLIVRWKRAE LRHRARAARN
KQE*