GBrowse Details

Vigan.11G125400.01

Basic Information:
Name: Vigan.11G125400.01
Multiple alignment
Variant Information
Position: Chr11:19123282..19126915 (+ strand)
Length: 3634
Functional Information:
Description: Similar to uncharacterized protein. [F6HNG2, Vitis vinifera]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:77.73,33.75,29.28,23.28,34.11,48.30,33.86,28.84
Arabidopsis thaliana homolog: AT2G28370.1
Automatic updates:
Name: NM_001249739 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306043 (LOC100306043), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:19123282..19123482 (+ strand)
Length: 201
Type: five_prime_UTR
Position: Chr11:19123483..19123700 (+ strand)
Length: 218
Type: CDS
Position: Chr11:19125720..19125852 (+ strand)
Length: 133
Type: CDS
Position: Chr11:19126391..19126582 (+ strand)
Length: 192
Type: CDS
Position: Chr11:19126583..19126915 (+ strand)
Length: 333
Type: three_prime_UTR


>Vigan.11G125400.01
GTAATAACGC TGTCGAAAAA AAAAAGAAAA TGAAAAGGAA AAGGAGTGTG ATGAAAGAGA AAAAGCGTGT CAAAGTTCCA
CCAGCAGCAG TAGTACCACC ACCAACGTTT GGTGGAGCGA AGCAAAACCT GTAGAACCAG AAAACCCTTT GTCGTATTAT
TGTTCTTTTC TCTCTTTGTT CTTGTTCTTG CACGTTTTGC CATGTCGATG TCGATGGTGC ACCCTTCAGT TCACCCAATC
GAAGCCCCAC CCATGACTGA CCATGCAATT GCAATTCCTA GACACACTTT GAAGGACACT CAGGGCATGC CCGGCACCCT
CGGTGGCTTC CTCTTGCGCT TTCTTCAGTT CTCCTTTGCC GTCGTTTCCC TCTCCGTCAT GGCCACCACC TCTGATTTCC
CTTCCGTCAC CGCCTTCCGC TACCTAGTTG CTGCTGTCAG CCTGCAAAGC TTGTGGAGCC TCTCTTTGGC AGTTGCTGAT
ATCTATGCCA TTTTAGTACG GCGTGGCTAC CGAAATATTA AAGTCGTCTG CTTATTCTCT ATCGGTGATG GGATTACTTC
AACACTTACA TTTTCTGCAG CCTGTGCTTC TGCTGGTATC ACTGTTCTCA TTGGCAATGA TTTGAATGAC TGTGCACAGA
ACCATTGCAG TAGGTTTGAA ACAGCCACGG CAATGGCATT TATGAGTTGG TTTGCTGCTT CTCCCTCATT TATTTTGAAT
TTCTGGTCAC TGGCCTCCAA ATAGAAGCAG CAGAAAAGGG TTTTAGCTGT TTATATATGG CATGTAACTT TGGGGATTGA
TGGCCCTGAT TGTTGCAAAT CTTATTCATG GCTTTTTTGA TCCTTTGAAA TATTGGTGCT GTTCAATTCA AGGCATGAGC
TTGAAACTTT TAGTTGTGAT GTTCATAATT TCTCAAACAA TGGTAACTTT CCAAGTAAAT GTAGATCAAA TTTAACTTGA
CTCATTAATC TGTAGGTTAA ACAGGTTCGG ACTTTGTCGA AGGTTCAAAC TTTGTTGAAG GTGGGTTGAT TTATAATTTA
TCAACAACAA TATTTTATTA TTGGTCTATT TTTTTTA

>Vigan.11G125400.01
ATGTCGATGT CGATGGTGCA CCCTTCAGTT CACCCAATCG AAGCCCCACC CATGACTGAC CATGCAATTG CAATTCCTAG
ACACACTTTG AAGGACACTC AGGGCATGCC CGGCACCCTC GGTGGCTTCC TCTTGCGCTT TCTTCAGTTC TCCTTTGCCG
TCGTTTCCCT CTCCGTCATG GCCACCACCT CTGATTTCCC TTCCGTCACC GCCTTCCGCT ACCTAGTTGC TGCTGTCAGC
CTGCAAAGCT TGTGGAGCCT CTCTTTGGCA GTTGCTGATA TCTATGCCAT TTTAGTACGG CGTGGCTACC GAAATATTAA
AGTCGTCTGC TTATTCTCTA TCGGTGATGG GATTACTTCA ACACTTACAT TTTCTGCAGC CTGTGCTTCT GCTGGTATCA
CTGTTCTCAT TGGCAATGAT TTGAATGACT GTGCACAGAA CCATTGCAGT AGGTTTGAAA CAGCCACGGC AATGGCATTT
ATGAGTTGGT TTGCTGCTTC TCCCTCATTT ATTTTGAATT TCTGGTCACT GGCCTCCAAA TAG

>Vigan.11G125400.01
MSMSMVHPSV HPIEAPPMTD HAIAIPRHTL KDTQGMPGTL GGFLLRFLQF SFAVVSLSVM ATTSDFPSVT AFRYLVAAVS
LQSLWSLSLA VADIYAILVR RGYRNIKVVC LFSIGDGITS TLTFSAACAS AGITVLIGND LNDCAQNHCS RFETATAMAF
MSWFAASPSF ILNFWSLASK *