GBrowse Details

Vigan.11G135600.01

Basic Information:
Name: Vigan.11G135600.01
Multiple alignment
Variant Information
Position: Chr11:21416430..21452570 (- strand)
Length: 36141
Functional Information:
Description: Similar to dehydrogenase/reductase SDR family member 12. [XP_008237465.1, Prunus mume]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.73,3.71,8.09,19.09,1.48,5.29,1.19,9.31
Arabidopsis thaliana homolog: AT4G09750.1
Automatic updates:
Name: NM_001255131 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dehydrogenase/reductase SDR family member 12-like (LOC100775215), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:21416430..21416688 (- strand)
Length: 259
Type: three_prime_UTR
Position: Chr11:21416689..21416899 (- strand)
Length: 211
Type: CDS
Position: Chr11:21417781..21417902 (- strand)
Length: 122
Type: CDS
Position: Chr11:21427383..21427439 (- strand)
Length: 57
Type: CDS
Position: Chr11:21427518..21427668 (- strand)
Length: 151
Type: CDS
Position: Chr11:21427770..21427819 (- strand)
Length: 50
Type: CDS
Position: Chr11:21427958..21428038 (- strand)
Length: 81
Type: CDS
Position: Chr11:21428238..21428337 (- strand)
Length: 100
Type: CDS
Position: Chr11:21428424..21428543 (- strand)
Length: 120
Type: CDS
Position: Chr11:21452261..21452322 (- strand)
Length: 62
Type: CDS
Position: Chr11:21452427..21452501 (- strand)
Length: 75
Type: CDS
Position: Chr11:21452502..21452570 (- strand)
Length: 69
Type: five_prime_UTR


>Vigan.11G135600.01
GTTGTCTCCA ATTTCTACGG AACACAACGT AAGCGTCGTT AGACAAGTCA GCAAAAGCAA GCTCAGCTAA TGAAGAGTGG
AGCGTTGCAC TTCCAACTGC AACTCCACCT CTCCATTCTA CCACTCGCCA TGGTTTTTCT CAAGATATGG AGACAAACGG
CTTTTTCTGT TTTTGGGTAC CTAAATTTCA CCAAAGCTGG TTTCCTTGAT CATTCTAAGA ACTTCAAACC AGAGGACATG
GAAATACAAA TACCTGGGAA AAATTGCATT GTTACCGGTG CTAACTCTGG AATTGGCTAT GCAACGGCTG AGGGTCTTGC
AAAGCGTGGG GCAACTGTCT ATCTTATATG CCGTAATAAG GAGAAAGGAG AGGCTGCTCT TTCTGAAATT CAAACTAGAA
CTGGCAACCA AAATGTTCAT TTGGAGATTT GTGACCTTTC TTCTGTCAAC GAGATCAAGT CATTCACTTC CAGGTTTTCT
AAAAGAAATG TGCCAGTTCA TGTGTTGGTT AACAATGCCG GCATACTTGA GCAAAATCGA GTCACCACAC CTGAAGGATT
TGAGTTGAAC TTTGCTGTAA ATGTATTGGG AACTTACACC ATGACAGAAT TAATGGTTCC GTTACTGGAG AAAGCTTCAC
CTGATGCGCG TGTCATTACA GTTTCTTCTG GTGGAATGTA TACTTCTCCT TTGACTAAAG ATCTACAGTA TTCAGAGAGC
AACTTTAACG GGGTTGAACA GTATGCTCGG AACAAGCGTG TTCAGGTTGC ACTAACAGAA AAATGGGCCA GAACATATGA
GAACAAAGGG ATAGGATTTT ACTCAATGCA CCCAGGCTGG GCTGAGACTC CTGGAGTTGC AAAGAGTTTG CCAAGCTTCT
CAAATTCGTT TTCAGGGAAG CTTAGAACAA GTGAAGAAGG TGCAGACACA GTCATATGGT TGACATTACA ACCAAAGGAA
AAACTGGTGT CAGGTGCATT TTATTTTGAT AGAGCTGAAG CTCCAAAGCA CCTTACATTT GCTGGTACCA GTGATTCTCA
TGCTATAATC GATTCTGTTG TTGATAGTCT TCATTCCATG GCTTCTCTTT TTGGCTAATC ATGTATTTTT TGTCCTGACA
TTAGACATCT AGTGGCACAA TATAACATTT CTATAGTTAG TGGGTTGATA TAAATTGATT TCAGCAATAA ACTAAATTCT
TCTTCAACCA AACCAGACTT TTGAGATGCA AAAACTACTT AATTTGGATG AATTTCATTT GTTGTTTCAC GTCATTAGTT
TTATTTTATT TCAGATAATA ACATAACGAA TGGGATGATG AATTGTATTT TTCTTCTTGA ACGCTAACAT TAGTGTG

>Vigan.11G135600.01
ATGAAGAGTG GAGCGTTGCA CTTCCAACTG CAACTCCACC TCTCCATTCT ACCACTCGCC ATGGTTTTTC TCAAGATATG
GAGACAAACG GCTTTTTCTG TTTTTGGGTA CCTAAATTTC ACCAAAGCTG GTTTCCTTGA TCATTCTAAG AACTTCAAAC
CAGAGGACAT GGAAATACAA ATACCTGGGA AAAATTGCAT TGTTACCGGT GCTAACTCTG GAATTGGCTA TGCAACGGCT
GAGGGTCTTG CAAAGCGTGG GGCAACTGTC TATCTTATAT GCCGTAATAA GGAGAAAGGA GAGGCTGCTC TTTCTGAAAT
TCAAACTAGA ACTGGCAACC AAAATGTTCA TTTGGAGATT TGTGACCTTT CTTCTGTCAA CGAGATCAAG TCATTCACTT
CCAGGTTTTC TAAAAGAAAT GTGCCAGTTC ATGTGTTGGT TAACAATGCC GGCATACTTG AGCAAAATCG AGTCACCACA
CCTGAAGGAT TTGAGTTGAA CTTTGCTGTA AATGTATTGG GAACTTACAC CATGACAGAA TTAATGGTTC CGTTACTGGA
GAAAGCTTCA CCTGATGCGC GTGTCATTAC AGTTTCTTCT GGTGGAATGT ATACTTCTCC TTTGACTAAA GATCTACAGT
ATTCAGAGAG CAACTTTAAC GGGGTTGAAC AGTATGCTCG GAACAAGCGT GTTCAGGTTG CACTAACAGA AAAATGGGCC
AGAACATATG AGAACAAAGG GATAGGATTT TACTCAATGC ACCCAGGCTG GGCTGAGACT CCTGGAGTTG CAAAGAGTTT
GCCAAGCTTC TCAAATTCGT TTTCAGGGAA GCTTAGAACA AGTGAAGAAG GTGCAGACAC AGTCATATGG TTGACATTAC
AACCAAAGGA AAAACTGGTG TCAGGTGCAT TTTATTTTGA TAGAGCTGAA GCTCCAAAGC ACCTTACATT TGCTGGTACC
AGTGATTCTC ATGCTATAAT CGATTCTGTT GTTGATAGTC TTCATTCCAT GGCTTCTCTT TTTGGCTAA

>Vigan.11G135600.01
MKSGALHFQL QLHLSILPLA MVFLKIWRQT AFSVFGYLNF TKAGFLDHSK NFKPEDMEIQ IPGKNCIVTG ANSGIGYATA
EGLAKRGATV YLICRNKEKG EAALSEIQTR TGNQNVHLEI CDLSSVNEIK SFTSRFSKRN VPVHVLVNNA GILEQNRVTT
PEGFELNFAV NVLGTYTMTE LMVPLLEKAS PDARVITVSS GGMYTSPLTK DLQYSESNFN GVEQYARNKR VQVALTEKWA
RTYENKGIGF YSMHPGWAET PGVAKSLPSF SNSFSGKLRT SEEGADTVIW LTLQPKEKLV SGAFYFDRAE APKHLTFAGT
SDSHAIIDSV VDSLHSMASL FG*