GBrowse Details

Vigan.11G142000.01

Basic Information:
Name: Vigan.11G142000.01
Multiple alignment
Variant Information
Position: Chr11:22548522..22550601 (- strand)
Length: 2080
Functional Information:
Description: Similar to Uncharacterized protein. [I1JDC2, Glycine max]
InterPro: Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.30,5.58,57.55,1.16,2.84,1.90,9.73
Automatic updates:
Name: NM_001250185 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527001 (LOC100527001), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:22548522..22549068 (- strand)
Length: 547
Type: three_prime_UTR
Position: Chr11:22549069..22549183 (- strand)
Length: 115
Type: CDS
Position: Chr11:22549863..22550305 (- strand)
Length: 443
Type: CDS
Position: Chr11:22550306..22550601 (- strand)
Length: 296
Type: five_prime_UTR


>Vigan.11G142000.01
CAAAATCAGA CAAAATTCAG TGGTTGATGA TGCCAGATGA CTGACCCTGA TGAAGTAAAA AACGACATTC TTGGTCAGCT
TTTAGTGGTT AAGACACTTA CAACTCCACT CACTTTGAGC CTCTTTCTCT TGGAAACTTG GTCACACCTT ATCCACACAC
ATCTTCTCTG ATTCTGATAA GATACCACAA AGTACAACCC AATAGAAGAA AATGGCTAAT CCAGAATATA ATAAGGTAAA
AATCTTTGCA CAGTTAGTTA GCATCAAGAG AAAGAAAAAA CAAAAATAAA CAAAAAATGT CTCTGGCATC TTCAATCCCA
TGCATCAAAA TCCCAACTTG TTCCTCTTCT CCATCATGTT CTTCCTCAAC TTCATCCTAT TCTTTCAGGT TTTCTTCTTC
CAAGCCTCAC AGTGTCACTA TAAGGAGCTC TCAGGCTGAA GGGCCTGTGA GAAGGCCAGT GGCACCCCAG ATAAGAGAAC
CATCATCAAC AAGTGTTCCT CCTCAGCTTC AGAAGCCAGC ACTTCCTTCT CAGACTCCTC CATCACCCCC TTCAGTGGTG
CCTCCACCAC AGAAGCCTGC TAGTTCTGTT GTTGGGGATG GTAAGAATGT CATTACATTA GAGTTTCAGA GGCAAATGGC
TAAGGAGTTG CAGGAATACT TCAAACAGAA GAAGCTTGAA GAAGCAAATC AGGGTCCTTT CTTTGGTTTC ATAGGGAAAA
ATGAGATTAA CAATGGAAGA TGGGCAATGT TTGGTTTTGC AGTAGGATTG CTTACAGAGT ATGCAACAGG CTCAGACTTT
GTTGATCAAA TAAAGATCCT TCTCTCGAAT TTTGGGATAG TAGATTTGGA ATGAATGAAT ACCTCAATAT GAAATACTGT
CAATACTTTC TTGTTCCTGT CGCTGGTGTA AACTATGTTG AGTAATTTGT TTTGTAATTC ATTTGTACAA AACAAGCTTT
CTCTTCATAT TGATGAATCT CAAGAATTTG ATGTTCCTTT TCCCATTATG CTGGACTCCC TAGAGATCGA AAAATTTAAA
GAGCATTGCA GTTTTATAGT GACACTGATA CTGATAGAAT ATGTAAGGTT GTGATAGATT ACATGGTAAC TAATCAGCTA
TTCTCTTGAG GAATAGCTTG GAAAGGTAGT CGGTTTTACC AGCTTGAAAC CTGTGTTGAA AATATGTCTA ATATCAGAAG
TTTGAAGTGG ATAATTTCCT ATGAATTGTC ATTGTCACAA CTCTGATAAT ATGTTGTTTT GTAAAGTGAC ATTGTGAAAC
GTTTCTATCT CGTTTTATTG GAAATATAAA GTTTTTGTTT ATTTTTCTTA TAAGATTGAG ATGACTTCTT GTGAGACTAT
CAAGTTTCCA ATGAGATTTT CTTCCTCCTT TTCCACCAAC C

>Vigan.11G142000.01
ATGTCTCTGG CATCTTCAAT CCCATGCATC AAAATCCCAA CTTGTTCCTC TTCTCCATCA TGTTCTTCCT CAACTTCATC
CTATTCTTTC AGGTTTTCTT CTTCCAAGCC TCACAGTGTC ACTATAAGGA GCTCTCAGGC TGAAGGGCCT GTGAGAAGGC
CAGTGGCACC CCAGATAAGA GAACCATCAT CAACAAGTGT TCCTCCTCAG CTTCAGAAGC CAGCACTTCC TTCTCAGACT
CCTCCATCAC CCCCTTCAGT GGTGCCTCCA CCACAGAAGC CTGCTAGTTC TGTTGTTGGG GATGGTAAGA ATGTCATTAC
ATTAGAGTTT CAGAGGCAAA TGGCTAAGGA GTTGCAGGAA TACTTCAAAC AGAAGAAGCT TGAAGAAGCA AATCAGGGTC
CTTTCTTTGG TTTCATAGGG AAAAATGAGA TTAACAATGG AAGATGGGCA ATGTTTGGTT TTGCAGTAGG ATTGCTTACA
GAGTATGCAA CAGGCTCAGA CTTTGTTGAT CAAATAAAGA TCCTTCTCTC GAATTTTGGG ATAGTAGATT TGGAATGA

>Vigan.11G142000.01
MSLASSIPCI KIPTCSSSPS CSSSTSSYSF RFSSSKPHSV TIRSSQAEGP VRRPVAPQIR EPSSTSVPPQ LQKPALPSQT
PPSPPSVVPP PQKPASSVVG DGKNVITLEF QRQMAKELQE YFKQKKLEEA NQGPFFGFIG KNEINNGRWA MFGFAVGLLT
EYATGSDFVD QIKILLSNFG IVDLE*