GBrowse Details

Vigan.11G142400.01

Basic Information:
Name: Vigan.11G142400.01
Multiple alignment
Variant Information
Position: Chr11:22599200..22603207 (- strand)
Length: 4008
Functional Information:
Description: Similar to Holocarboxylase synthetase. [K0A0U9, Elaeis guineensis var. tenera]
InterPro: Uncharacterised conserved protein UCP009193 (IPR016549)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:60.88,49.61,10.61,13.20,15.19,15.29,14.06,11.26
Arabidopsis thaliana homolog: AT4G09830.1
Automatic updates:
Name: NM_001255221 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100796484 (LOC100796484), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:22599200..22599583 (- strand)
Length: 384
Type: three_prime_UTR
Position: Chr11:22599584..22599964 (- strand)
Length: 381
Type: CDS
Position: Chr11:22601995..22602075 (- strand)
Length: 81
Type: CDS
Position: Chr11:22602891..22603049 (- strand)
Length: 159
Type: CDS
Position: Chr11:22603050..22603207 (- strand)
Length: 158
Type: five_prime_UTR


>Vigan.11G142400.01
CTGCATGTAG CTTTTCTTCT CTCTCCTTCC CAACCTTTTC TTTTCTTCCT CTGTAAAACC CAAACACTTC CTTCCTCTGC
CACCGCTAAC ACCAACCCTT GTCACCCAAA TCTCCAATCT CAAAGAACCA CCCTAACGCT CTCTCCACCG ATTCCGCCAT
GGCCAAGAAG CGCAAGTCCA TTACCACCAG CCTCGACGAG GTCGATCGGA CCCTCTACGC CTCATTCTGT ACCGCCGCCA
ATTCCCTCTC CCAGCTCTAC ACGCACACCA TGAACCACCA GAAGCTCTCC TTCAACGCCG GCGAACGCCA CGCCCTCGAA
AATCTTTATG AGTGGATTTG GAGACAACAA GAAGGAGGAT CAAGGGTTGC AACAATTGAT GTGCTCAACT ACATACAGAA
TGAGCTGGAT TATTGTGAAG AGCCATCTAT GTCACCTAGA GCACCACTGC AACACCACCA GTCACAACCA ACATTGCATA
TGCCCAGCTT GGGCTTTCCT GTCACTTCAG CGTCTTCTGG CCAAACTATA GCTGCACAAG GACTTCGTGC CGAACCTGAT
GAAAATCAAC AGAAAAATTC TGTGTTTTCG AATGCCTTGT CAAGTCCAAT ACGCCGAAGC CTTCAACATT ATCAAATTGG
TGAGGGAGGA TGCTACAGCA ATGGTCCCTT CATGGGGAAT GGAAACCGGA ACACTGAACT TGGCTTTCTT TCTCAGCATG
GCAGGGAATC AATAGTAATG AGCTCCAATG ATTCTGCCAT GGATATGCAT GCAGACTAGT CCTGTATATT GGTTTATCAA
TTGGGAATTC TTAACTCAGC AGCCTTCTGC AACAGCTACA ACAGAAGCCA ACAACCTTGG AAATTCCATT TCTGGATTTT
CTCATTGGAT CTTGCAAGAA ACGACAGGCG GAAGGAACTA ATTATGTTAA CCTTTTACTA TGCTTATGTC AACCGGGTGA
TCGGTTTGGG GTTCTTAGTG GTTTTTGTAA AGTTTTTAAG AGTTTTAAGA GTTGTTTTAG TGGTTTGGGG TTTTTAAGTT
TTATGTCAAC CAATTCTGTT GATCAGCTTT TAAGAGTTTT ATTTTGTACC TTGAATTGTT TCACTCCTCG CCCTTTCACC
AAAAAAGCTG TCTTTTCAGT GTACGGCTGA TTCTATCTGA AGT

>Vigan.11G142400.01
ATGGCCAAGA AGCGCAAGTC CATTACCACC AGCCTCGACG AGGTCGATCG GACCCTCTAC GCCTCATTCT GTACCGCCGC
CAATTCCCTC TCCCAGCTCT ACACGCACAC CATGAACCAC CAGAAGCTCT CCTTCAACGC CGGCGAACGC CACGCCCTCG
AAAATCTTTA TGAGTGGATT TGGAGACAAC AAGAAGGAGG ATCAAGGGTT GCAACAATTG ATGTGCTCAA CTACATACAG
AATGAGCTGG ATTATTGTGA AGAGCCATCT ATGTCACCTA GAGCACCACT GCAACACCAC CAGTCACAAC CAACATTGCA
TATGCCCAGC TTGGGCTTTC CTGTCACTTC AGCGTCTTCT GGCCAAACTA TAGCTGCACA AGGACTTCGT GCCGAACCTG
ATGAAAATCA ACAGAAAAAT TCTGTGTTTT CGAATGCCTT GTCAAGTCCA ATACGCCGAA GCCTTCAACA TTATCAAATT
GGTGAGGGAG GATGCTACAG CAATGGTCCC TTCATGGGGA ATGGAAACCG GAACACTGAA CTTGGCTTTC TTTCTCAGCA
TGGCAGGGAA TCAATAGTAA TGAGCTCCAA TGATTCTGCC ATGGATATGC ATGCAGACTA G

>Vigan.11G142400.01
MAKKRKSITT SLDEVDRTLY ASFCTAANSL SQLYTHTMNH QKLSFNAGER HALENLYEWI WRQQEGGSRV ATIDVLNYIQ
NELDYCEEPS MSPRAPLQHH QSQPTLHMPS LGFPVTSASS GQTIAAQGLR AEPDENQQKN SVFSNALSSP IRRSLQHYQI
GEGGCYSNGP FMGNGNRNTE LGFLSQHGRE SIVMSSNDSA MDMHAD*