GBrowse Details

Vigan.11G144800.01

Basic Information:
Name: Vigan.11G144800.01
Multiple alignment
Variant Information
Position: Chr11:23169841..23170888 (+ strand)
Length: 1048
Functional Information:
Description: Similar to TIP protein. [I2G7N7, Nicotiana tabacum]
GO: Biological Process: response to stress (GO:0006950)
InterPro: ABA/WDS induced protein (IPR003496)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.59,0.68,98.72,71.21,0.51,458.10,93.01,377.62
Automatic updates:
Name: NM_001349567 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ABA/WDS induced protein (LOC110008578), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:23169841..23169906 (+ strand)
Length: 66
Type: five_prime_UTR
Position: Chr11:23169907..23170170 (+ strand)
Length: 264
Type: CDS
Position: Chr11:23170396..23170581 (+ strand)
Length: 186
Type: CDS
Position: Chr11:23170582..23170888 (+ strand)
Length: 307
Type: three_prime_UTR


>Vigan.11G144800.01
CTTTTATAAA ATCATTTATT GGCCTATAGA AAGGTGCATC TAACCAACCA ATCACACATC CTTAAGATGA TCATCATTTC
CATTATAAAT ACAACAACTA AGCTTCTTAT TCTCCCAACA CACCTAAAAC CCATTTCCCT AATCATATAC ATTTTGGCTT
TGACTTTCTA TATATCTATC ATCATGGCTG AGGAGCACCA CCATCACCTC TTCCACCACC ACAAAGAGGA AGTTCCCGGT
GAGGTTGATT ACAAGAAGGA GGAGAAGCAT CACAAGCATC TTGAACACCT TGGAGAACTT GGAACTGCTG CAGCTGGTGC
TTATGCCTTG CATGAGAAGC ACGAGGCAAA GAAAGACCCA GAACATGCTC ACAGGCACAA GGTAGAAGAG GAGATTGCAG
CTGCTGCTGC GGTTGGTGCT GGTGGTTTTG TGTTCCATGA ACACCATGAG AAAAAGGAAG ACAAGAAAGA AGATGAGGAA
GCTCATGGAA AGAAGCACCA TCATCTCTTT GGCTGAATCG ACATCAACAT GATAACAATA TTCAAGCTCA GAATATCATC
AGTGTGTCTG TTTTATTTTA TATTCTGCAG TGCCTAAAAA TAATTTCTGA GCATGTTTGA AGAGTGTTTT ATTAGTTATA
CTTTATGTAT CTACTATCAT ATGCTATAAT AATGTACATG TGCATTATAT TGGCTATATT AATAACATAG TCGAGTGATT
TTAAATTATT TTATCACCAT TCCCTTTCTC TTGCATTGAT ATTCTGATAA ATATTACCAA TCATTCGAAA TGCAAGCATG
ATGATGGAAG AGTCATTCTG AAG

>Vigan.11G144800.01
ATGATCATCA TTTCCATTAT AAATACAACA ACTAAGCTTC TTATTCTCCC AACACACCTA AAACCCATTT CCCTAATCAT
ATACATTTTG GCTTTGACTT TCTATATATC TATCATCATG GCTGAGGAGC ACCACCATCA CCTCTTCCAC CACCACAAAG
AGGAAGTTCC CGGTGAGGTT GATTACAAGA AGGAGGAGAA GCATCACAAG CATCTTGAAC ACCTTGGAGA ACTTGGAACT
GCTGCAGCTG GTGCTTATGC CTTGCATGAG AAGCACGAGG CAAAGAAAGA CCCAGAACAT GCTCACAGGC ACAAGGTAGA
AGAGGAGATT GCAGCTGCTG CTGCGGTTGG TGCTGGTGGT TTTGTGTTCC ATGAACACCA TGAGAAAAAG GAAGACAAGA
AAGAAGATGA GGAAGCTCAT GGAAAGAAGC ACCATCATCT CTTTGGCTGA 

>Vigan.11G144800.01
MIIISIINTT TKLLILPTHL KPISLIIYIL ALTFYISIIM AEEHHHHLFH HHKEEVPGEV DYKKEEKHHK HLEHLGELGT
AAAGAYALHE KHEAKKDPEH AHRHKVEEEI AAAAAVGAGG FVFHEHHEKK EDKKEDEEAH GKKHHHLFG*