GBrowse Details

Vigan.11G146700.01

Basic Information:
Name: Vigan.11G146700.01
Multiple alignment
Variant Information
Position: Chr11:23858680..23861684 (+ strand)
Length: 3005
Functional Information:
Description: Similar to Uncharacterized protein. [I3SU67, Lotus japonicus]
InterPro: Ribonucleoprotein LSM domain (IPR001163)
Ribonucleoprotein LSM domain, eukaryotic/archaea-type (IPR006649)
Like-Sm (LSM) domain (IPR010920)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.25,29.27,36.39,49.18,54.19,74.41,68.64,33.10
Arabidopsis thaliana homolog: AT1G76860.1
Automatic updates:
Name: NM_001249032 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499782 (LOC100499782), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249628 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306547 (LOC100306547), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:23858680..23858749 (+ strand)
Length: 70
Type: five_prime_UTR
Position: Chr11:23858750..23858866 (+ strand)
Length: 117
Type: CDS
Position: Chr11:23860487..23860582 (+ strand)
Length: 96
Type: CDS
Position: Chr11:23861127..23861207 (+ strand)
Length: 81
Type: CDS
Position: Chr11:23861208..23861684 (+ strand)
Length: 477
Type: three_prime_UTR


>Vigan.11G146700.01
ATTGACTCAA AAGGGTTACA CGAAAAAACT TACCTCCAAA ATCAGAAGAC TGAAACTAGT GAAGTGACTG ATGGCTACAG
AGGAAGAGAG TGCGGTGAAG GAGCCTTTGG ATCTCATTAG GCTCAGCCTT GACGAACGTA TCTACGTTAA GCTCCGTTCT
GACAGAGAGC TTCGTGGAAA ACTTCACGCT TACGATCAAC ATCTTAATAT GATTCTTGGT GATGTTGAAG AGATTGTTAC
TACTGTGGAA ATTGATGACG AGACATATGA AGAAATTGTG AGGACTACTA AGCGGACGGT TCCTTTCCTG TTTGTTAGGG
GAGATGGGGT GATATTGGTT TCCCCGCCCT TGAGGACTGC ATAACATGAA CCCATGATGA ACAATGTGAT CATTTGAATA
ACAAGTGTCA CTGTTTATGA AATTGTACAA CTTAAGTAGT GATCTCCTTA TGATTAGATT AGCTACTTAA TTGGCTTGTG
TGCTAGAGAT TTATGTTAGA CAGTCAATTT TCAATCATCT TTATAGCTTA AAAGAATCAT GGCATGCACA TGTAAACAAG
GATTTTTTCT GTTGTGTGGA GCTGCCATTA TATCACTGAC TCCATGAAAA GTGTAGGCCA TGGTTCTTGA TTTGATATCT
CTTCTTCATG TCCTTGTTTA TTTTTCGTTA CAGTAGAAGA TATTAGAACT GGGATGATAT TCCAGTTTGG TGCATCTAAT
TATGAAGTTT TCCAAACATT TCTTTAGTTA AAGTGAAACT TTTTTTCCAA AGAAAAAATT GAGATAATTT TCCATTCATG
ATTTGAAGGA TACAGGTAGG CTATTATAGT TCAAAGCACG G

>Vigan.11G146700.01
ATGGCTACAG AGGAAGAGAG TGCGGTGAAG GAGCCTTTGG ATCTCATTAG GCTCAGCCTT GACGAACGTA TCTACGTTAA
GCTCCGTTCT GACAGAGAGC TTCGTGGAAA ACTTCACGCT TACGATCAAC ATCTTAATAT GATTCTTGGT GATGTTGAAG
AGATTGTTAC TACTGTGGAA ATTGATGACG AGACATATGA AGAAATTGTG AGGACTACTA AGCGGACGGT TCCTTTCCTG
TTTGTTAGGG GAGATGGGGT GATATTGGTT TCCCCGCCCT TGAGGACTGC ATAA

>Vigan.11G146700.01
MATEEESAVK EPLDLIRLSL DERIYVKLRS DRELRGKLHA YDQHLNMILG DVEEIVTTVE IDDETYEEIV RTTKRTVPFL
FVRGDGVILV SPPLRTA*