GBrowse Details

Vigan.11G151700.01

Basic Information:
Name: Vigan.11G151700.01
Multiple alignment
Variant Information
Position: Chr11:24911503..24916132 (+ strand)
Length: 4630
Functional Information:
Description: Similar to BZIP transcription factor bZIP131. [Q0GPF5, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Basic-leucine zipper domain (IPR004827)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.05,24.74,7.75,15.20,7.13,13.76,12.77,15.51
Arabidopsis thaliana homolog: AT1G43700.1
Automatic updates:
Name: NM_001250265 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative bZIP domain class transcription factor (LOC778142), mRNA.
PubMed ID: 18365246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:24911503..24911885 (+ strand)
Length: 383
Type: five_prime_UTR
Position: Chr11:24911886..24912418 (+ strand)
Length: 533
Type: CDS
Position: Chr11:24913085..24913217 (+ strand)
Length: 133
Type: CDS
Position: Chr11:24915110..24915194 (+ strand)
Length: 85
Type: CDS
Position: Chr11:24915459..24915700 (+ strand)
Length: 242
Type: CDS
Position: Chr11:24915701..24916132 (+ strand)
Length: 432
Type: three_prime_UTR


>Vigan.11G151700.01
TTAATAAGGC TATTTAATGA ATATATTCCA CTACTAAATT GTTGTTTCCA TTAAACTCCA AATTGAAAAT GGTGTCAACT
CTAGTTACGC CACCAATGAA CATTGCCGTC AGATATCTCT AATCCCAACA CTAATGATGC TCTTTGAGAC CACTGCCTTC
ACACAACTTC CTCAACTTTT GCTCACTAAA GTCAATTTCT TGTCTGCTTC CACTTGTTCC TCAGCAAATT CACACACAAC
CACAACCCAA CAACCACCTG AACAACCCTC TTCTTCTTTC TCTCTCTTCA CCATCACCAA CACCAACAAG AACAAAAACA
AATAACAATC CAAGAAAGAA AAGGAAGACG AGAAAGAAAG ATTGGATTTT TATTCTTACT TCGATGGACC CGAAGTTCAC
CGGAAAGCCG CCGCTGACGG TGGACCTTGA ACGCATGCCG GAGCGTGGGT CCCACCACCG CCGCTCCCAC TCCGACACGT
CCTTCCGCTT CGCCGCGAAC TTCGATGACC TGCTCCTCTT CGACGCCTCC GACCTCGACA TCTCCACGCT CCCCTCGCCG
CTCCCTCTGC CTTCACCGGG GGCCTCCGGC GCGGTGCCGA TAGCGGTAGA TTCCGACGAG TCCGGCGGAA GGCCGAGGCC
TTCAGGGGCA CCCGCCGGCG GGCACTTGAG GAGTCTGTCG GTGGGCTCCG ATTTCTTTGA CGGGATCGGA TTCGGCGGCG
GCGAGGAGAG GGGCGGCGGA GGGAGGGGCG GCGGCGAGCG GAGGGTGGGG CACCACCGGC ACAGCAACTC CATGGACGGG
TCCTCGACGA CGTCGTTTGA GGCGGACTCG GCGATGATGA TAGATGGCGT GAAGAAAGCT ATGGCTCCTG ATAAACTAGC
TGAACTCGCT CTTATTGATC CCAAAAGAGC TAAGAGGATT CTTGCTAACA GGCAATCTGC TGCTAGATCA AAGGAGAGGA
AGATTCGTTA CACCAGTGAA TTGGAGAGGA AGGTGCAGAC ACTTCAGACT GAAGCAACCA ACCTATCTGC ACAGCTTACC
ATGCTTCAGA GAGACACCAC AGATTTAACT GCAGAGAATA AGGAACTCAA ACTGCGTCTA GAGGCTTTAG AGCAAGAAGC
ACAGCTTAGA GAAGATCTGA ATGACGCATT GAAGGAAGAA CTGCAGCGCC TTAGGGCGCA GAGTACTCGT CTGGGTGCTA
TTGCAGGTAA CCCTTCTTTT GGTGGGATAT TCAACCAGTT GGCTTCCCAG TTAGCGATGC AACAGTTGAG TAATTCTGCA
CCACAGCAAC CACAACACCA GGCACAGGTT GGCATGCCTC CTCCTCCCTC TGGACAGAAC CACCCTAACT TCATGGATTT
CAATCAGCAG AAGTAGCTCA CAACAGCTGT AGCAGTAAAT GATTTGTTCA TCACAAGTAA CATCTTGTGC ACATACATGT
ATAACCGGTG AGACTTGTGA AGGGCATATT GTGCAGTTCA GTGTTCTTAG TTCTGTGTTG CTGTTTATCT TTAGTTCTAG
GATAGAACCG TTATATGTAC TTTCTGCAGT TGTAGGTTAG AAGCACAGCC TTTGAAACAT GTGTTATAGC TCTTGGTTGA
ATGAAGGTAA CAAAATATGT TATTGATTGA ATATTATACT ATAGATGGTG AATGAAGGCT ATATGTTAGA AGTATACATA
AAAGTGATTC AATTATTTGC TTAGAAGCAC CAAAAGAGAA GTTATTTTGC GAATTGAATG CTGGTATTTG AGAAGAAAAG
TACACTGAAC CGAAATTTCT GGCTAATGGG ACCGAGGTGA CAACAGAC

>Vigan.11G151700.01
ATGGACCCGA AGTTCACCGG AAAGCCGCCG CTGACGGTGG ACCTTGAACG CATGCCGGAG CGTGGGTCCC ACCACCGCCG
CTCCCACTCC GACACGTCCT TCCGCTTCGC CGCGAACTTC GATGACCTGC TCCTCTTCGA CGCCTCCGAC CTCGACATCT
CCACGCTCCC CTCGCCGCTC CCTCTGCCTT CACCGGGGGC CTCCGGCGCG GTGCCGATAG CGGTAGATTC CGACGAGTCC
GGCGGAAGGC CGAGGCCTTC AGGGGCACCC GCCGGCGGGC ACTTGAGGAG TCTGTCGGTG GGCTCCGATT TCTTTGACGG
GATCGGATTC GGCGGCGGCG AGGAGAGGGG CGGCGGAGGG AGGGGCGGCG GCGAGCGGAG GGTGGGGCAC CACCGGCACA
GCAACTCCAT GGACGGGTCC TCGACGACGT CGTTTGAGGC GGACTCGGCG ATGATGATAG ATGGCGTGAA GAAAGCTATG
GCTCCTGATA AACTAGCTGA ACTCGCTCTT ATTGATCCCA AAAGAGCTAA GAGGATTCTT GCTAACAGGC AATCTGCTGC
TAGATCAAAG GAGAGGAAGA TTCGTTACAC CAGTGAATTG GAGAGGAAGG TGCAGACACT TCAGACTGAA GCAACCAACC
TATCTGCACA GCTTACCATG CTTCAGAGAG ACACCACAGA TTTAACTGCA GAGAATAAGG AACTCAAACT GCGTCTAGAG
GCTTTAGAGC AAGAAGCACA GCTTAGAGAA GATCTGAATG ACGCATTGAA GGAAGAACTG CAGCGCCTTA GGGCGCAGAG
TACTCGTCTG GGTGCTATTG CAGGTAACCC TTCTTTTGGT GGGATATTCA ACCAGTTGGC TTCCCAGTTA GCGATGCAAC
AGTTGAGTAA TTCTGCACCA CAGCAACCAC AACACCAGGC ACAGGTTGGC ATGCCTCCTC CTCCCTCTGG ACAGAACCAC
CCTAACTTCA TGGATTTCAA TCAGCAGAAG TAG

>Vigan.11G151700.01
MDPKFTGKPP LTVDLERMPE RGSHHRRSHS DTSFRFAANF DDLLLFDASD LDISTLPSPL PLPSPGASGA VPIAVDSDES
GGRPRPSGAP AGGHLRSLSV GSDFFDGIGF GGGEERGGGG RGGGERRVGH HRHSNSMDGS STTSFEADSA MMIDGVKKAM
APDKLAELAL IDPKRAKRIL ANRQSAARSK ERKIRYTSEL ERKVQTLQTE ATNLSAQLTM LQRDTTDLTA ENKELKLRLE
ALEQEAQLRE DLNDALKEEL QRLRAQSTRL GAIAGNPSFG GIFNQLASQL AMQQLSNSAP QQPQHQAQVG MPPPPSGQNH
PNFMDFNQQK *