GBrowse Details

Vigan.11G151900.01

Basic Information:
Name: Vigan.11G151900.01
Multiple alignment
Variant Information
Position: Chr11:24923876..24926616 (+ strand)
Length: 2741
Functional Information:
Description: Similar to abscisic acid 8'-hydroxylase 3-like. [XP_003548125.1, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome P450 (IPR001128)
Cytochrome P450, E-class, group I (IPR002401)
Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,0.00,0.00,0.34,3.29,0.00
Automatic updates:
Name: NM_001255689 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max abscisic acid 8'-hydroxylase 3-like (LOC100803766), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:24923876..24924212 (+ strand)
Length: 337
Type: five_prime_UTR
Position: Chr11:24924213..24924421 (+ strand)
Length: 209
Type: CDS
Position: Chr11:24924668..24924986 (+ strand)
Length: 319
Type: CDS
Position: Chr11:24925084..24925236 (+ strand)
Length: 153
Type: CDS
Position: Chr11:24925346..24925609 (+ strand)
Length: 264
Type: CDS
Position: Chr11:24925691..24925777 (+ strand)
Length: 87
Type: CDS
Position: Chr11:24925865..24925943 (+ strand)
Length: 79
Type: CDS
Position: Chr11:24926059..24926165 (+ strand)
Length: 107
Type: CDS
Position: Chr11:24926248..24926366 (+ strand)
Length: 119
Type: CDS
Position: Chr11:24926489..24926579 (+ strand)
Length: 91
Type: CDS
Position: Chr11:24926580..24926616 (+ strand)
Length: 37
Type: three_prime_UTR


>Vigan.11G151900.01
CTTCAGCAAG AGCAAAGAAT TCCGTGAGAT TCTACCAAAG AAAAACTGTT GGATTCACCG CTTCAGAATT TGAGATTCCA
AAAAAAACTT TAGGATTTAC CATTTGAAAG TAACACATTG GCCTGCAGCT TAACTGATTC CAATATAGAT ATGAATACAT
GCTTCTTGGT GTTTGTGTCA TGTCAAAATC CATCACTCAT GTCCTAAGAA CAAAGGTGTT CAAGATAGAG AGAGATACAA
CTAATAACTG TAGCTTATAG TATATATAAA TACATATATA TAGGAGCATT TTCTTTGATT TACTACTACT GCAATTTGGT
GCTGGCTGTA AGTGAAAATG GAGCTGATCA ATTTGCTGCT CTCACTGATC CTTTCAGTGT TGTTGTTATC AGTGCTGTTC
TTGTTGTATC AAACTCGTTC TCCTAAAGCA ATGGAAGGCA TCCCTGGAAG CCTTGGTTGG CCAATTGTGG GAGAGAGCTT
CTCATTCCTC TCTGACTTTT CAAGTCCCTC TGGGATCTTC AGCTTCATGA TCAAGAGGCA AAAGAGATAT GGAATGGTTT
TCAAGAGCTT TGTCTTGGGG AGGTTTACTA TCTTCATGAC AGGGAGGGAA GCAAGTAAGA TATTGTTAAC TGGCAAGGAT
GGTCTTGTGA GTTTGAATCT GTTTTACACT GGCCAGCAAG TTCTGGGCCC CACCAGCTTG CTGCAAACCA CAGGGGAGGC
TCACAAAAGG CTAAGAAGGC TGATTGGTGA ACCTTTATCA ATTGATGGAC TGAAGAAATA TTTCCATTTT ATCAACACTC
AGGCTATGCA GACATTAGAT CAATGGGAAG GAAGGAAAGT CCTGGTTCTT GAAGAGGCTT CTACATTTAC TTTAAAAGTG
ATTGGACATA TGATCATGAG TTTAGAGCCT TCTGGGGAGG AGCAAGAAAA GTTTAGATCA AATTTTAAGA TTATTTCTTC
CTCATTTGCA TCGTTGCCAT TTAAACTTCC AGGGACAGCT TTTCATCGTG GCATCAAGGC TCGAGATAGG ATGTATGAGA
TGTTGGATTC TACAATTTTG AGGAGGAGAA GTGGCCAAGA CTTTCAACAG GATTTCTTAG GATCTTTAGT TATGAAACAC
AGAAAAGAAG ATGGAGAAGA AGATGAAAAT AAACTCACAG ACAAACAATT GAAGGATAAT ATATTAACTC TCCTGGTTGC
AGGCCATGAT ACCACAACTG CTGCTCTTAC TTGGCTCATT AAATTTCTTG CTGAGAATCC GATTGTTTTG GAAAAATTGA
GAGAGGAACA TAGACAAATT GTGGCCGGAA GAAAAATTGG AACAGATCTT ACCTGGGCAG AAGCTAATAA CATGCCCTAC
ACATTCAAAG TCATCAGTGA AACTCTTCGA AGAGCCACAA TACTACCTTG GTTTTCAAGA AAGGCATCTC AGGATTTTGA
AATTGATGGT TATAAAATTA AGAAAGGTTG GTCCGTCAAC CTAGATGTTG TTTCCATACA CCATGACCCA GAAGTTTTCC
CAGATCCTGA AAAGTTTGAT CCCTCAAGAT TCGATGAACC CGTGAAGCCT TTCAGTTTTC TTGGATTTGG TAGTGGACCA
CGTATGTGTC CTGGAATGAA CCTTGCCAAG CTTGAAATTT GTGTCTTCAT CCATCACCTT GTAAACAGAT ACAAGTGGAG
ACCTCTGGAG AATGAGAATT CTGTCCAACC AACGCTTGTA AGGATGCCAA AGAACAAATA TCCTATTATG GTTGAGTCAC
TGTAACACGT TTGCTCTAGC AACTACAAAC ACGAAACAGA AG

>Vigan.11G151900.01
ATGGAGCTGA TCAATTTGCT GCTCTCACTG ATCCTTTCAG TGTTGTTGTT ATCAGTGCTG TTCTTGTTGT ATCAAACTCG
TTCTCCTAAA GCAATGGAAG GCATCCCTGG AAGCCTTGGT TGGCCAATTG TGGGAGAGAG CTTCTCATTC CTCTCTGACT
TTTCAAGTCC CTCTGGGATC TTCAGCTTCA TGATCAAGAG GCAAAAGAGA TATGGAATGG TTTTCAAGAG CTTTGTCTTG
GGGAGGTTTA CTATCTTCAT GACAGGGAGG GAAGCAAGTA AGATATTGTT AACTGGCAAG GATGGTCTTG TGAGTTTGAA
TCTGTTTTAC ACTGGCCAGC AAGTTCTGGG CCCCACCAGC TTGCTGCAAA CCACAGGGGA GGCTCACAAA AGGCTAAGAA
GGCTGATTGG TGAACCTTTA TCAATTGATG GACTGAAGAA ATATTTCCAT TTTATCAACA CTCAGGCTAT GCAGACATTA
GATCAATGGG AAGGAAGGAA AGTCCTGGTT CTTGAAGAGG CTTCTACATT TACTTTAAAA GTGATTGGAC ATATGATCAT
GAGTTTAGAG CCTTCTGGGG AGGAGCAAGA AAAGTTTAGA TCAAATTTTA AGATTATTTC TTCCTCATTT GCATCGTTGC
CATTTAAACT TCCAGGGACA GCTTTTCATC GTGGCATCAA GGCTCGAGAT AGGATGTATG AGATGTTGGA TTCTACAATT
TTGAGGAGGA GAAGTGGCCA AGACTTTCAA CAGGATTTCT TAGGATCTTT AGTTATGAAA CACAGAAAAG AAGATGGAGA
AGAAGATGAA AATAAACTCA CAGACAAACA ATTGAAGGAT AATATATTAA CTCTCCTGGT TGCAGGCCAT GATACCACAA
CTGCTGCTCT TACTTGGCTC ATTAAATTTC TTGCTGAGAA TCCGATTGTT TTGGAAAAAT TGAGAGAGGA ACATAGACAA
ATTGTGGCCG GAAGAAAAAT TGGAACAGAT CTTACCTGGG CAGAAGCTAA TAACATGCCC TACACATTCA AAGTCATCAG
TGAAACTCTT CGAAGAGCCA CAATACTACC TTGGTTTTCA AGAAAGGCAT CTCAGGATTT TGAAATTGAT GGTTATAAAA
TTAAGAAAGG TTGGTCCGTC AACCTAGATG TTGTTTCCAT ACACCATGAC CCAGAAGTTT TCCCAGATCC TGAAAAGTTT
GATCCCTCAA GATTCGATGA ACCCGTGAAG CCTTTCAGTT TTCTTGGATT TGGTAGTGGA CCACGTATGT GTCCTGGAAT
GAACCTTGCC AAGCTTGAAA TTTGTGTCTT CATCCATCAC CTTGTAAACA GATACAAGTG GAGACCTCTG GAGAATGAGA
ATTCTGTCCA ACCAACGCTT GTAAGGATGC CAAAGAACAA ATATCCTATT ATGGTTGAGT CACTGTAA

>Vigan.11G151900.01
MELINLLLSL ILSVLLLSVL FLLYQTRSPK AMEGIPGSLG WPIVGESFSF LSDFSSPSGI FSFMIKRQKR YGMVFKSFVL
GRFTIFMTGR EASKILLTGK DGLVSLNLFY TGQQVLGPTS LLQTTGEAHK RLRRLIGEPL SIDGLKKYFH FINTQAMQTL
DQWEGRKVLV LEEASTFTLK VIGHMIMSLE PSGEEQEKFR SNFKIISSSF ASLPFKLPGT AFHRGIKARD RMYEMLDSTI
LRRRSGQDFQ QDFLGSLVMK HRKEDGEEDE NKLTDKQLKD NILTLLVAGH DTTTAALTWL IKFLAENPIV LEKLREEHRQ
IVAGRKIGTD LTWAEANNMP YTFKVISETL RRATILPWFS RKASQDFEID GYKIKKGWSV NLDVVSIHHD PEVFPDPEKF
DPSRFDEPVK PFSFLGFGSG PRMCPGMNLA KLEICVFIHH LVNRYKWRPL ENENSVQPTL VRMPKNKYPI MVESL*