GBrowse Details

Vigan.11G168600.01

Basic Information:
Name: Vigan.11G168600.01
Multiple alignment
Variant Information
Position: Chr11:28120262..28125296 (- strand)
Length: 5035
Functional Information:
Description: Similar to Uncharacterized protein. [I1MPF6, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide TPR1 (IPR001440)
CS domain (IPR007052)
SGS (IPR007699)
HSP20-like chaperone (IPR008978)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide repeat (IPR019734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.87,34.22,66.63,91.45,44.92,62.13,95.20,73.16
Arabidopsis thaliana homolog: AT4G11260.1
Automatic updates:
Name: NM_001249656 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SGT1-2 (LOC100194421), mRNA.
PubMed ID: 19061405 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:28120262..28120551 (- strand)
Length: 290
Type: three_prime_UTR
Position: Chr11:28120552..28120659 (- strand)
Length: 108
Type: CDS
Position: Chr11:28120847..28120951 (- strand)
Length: 105
Type: CDS
Position: Chr11:28121021..28121103 (- strand)
Length: 83
Type: CDS
Position: Chr11:28121530..28121668 (- strand)
Length: 139
Type: CDS
Position: Chr11:28121955..28122020 (- strand)
Length: 66
Type: CDS
Position: Chr11:28122141..28122237 (- strand)
Length: 97
Type: CDS
Position: Chr11:28123078..28123204 (- strand)
Length: 127
Type: CDS
Position: Chr11:28123403..28123527 (- strand)
Length: 125
Type: CDS
Position: Chr11:28124558..28124627 (- strand)
Length: 70
Type: CDS
Position: Chr11:28124935..28125094 (- strand)
Length: 160
Type: CDS
Position: Chr11:28125095..28125296 (- strand)
Length: 202
Type: five_prime_UTR


>Vigan.11G168600.01
GAAAGTCTTC TCATTTCCCC CTTGCAGTTT ACGTCTTCCA CTCTCTCTAT CATACCATAC CCATCTCACA TCCCTCTCTC
CCGTCAATCC ATCATTCCTA TTCCTTCTTC TTTCTCTTCG AATTCCAAAT CACACACTCC ATCTCTAGAG TTTTCTTTCT
CTTCTTCCTT CAAACCTTCT TTTTCCTCTC TTCTTTGCTC CCATGGCTTC CGATCTTGAA GCGAGAGCCA AAGAAGCCTT
TGTCGAAGAC CACTTCGAAC TCGCAGTGGA CCTTCTATCT CAGGCAATTA ACCTCGAACC CAACAAAGCT GAACTCTATG
CCGACCGCGC TCAAGGCAAC ATCAAATTGA ACAACTTAAC TGAGGCTGTT GCTGATGCTA ACAAAGCAAT TGAATTGAAT
CCTTCTCTGC CAAAAGCATA TCTACGGAAA GGTACTGCAT GCTTGAAGCT TGAGGAGTAT CAGACGGCCA AGGCTGCTCT
GGAGACTGGT GCTTCATTGT CTCCAGACAA CCCAAGATTT GTTAATTTAA TCAAAGAGTG TGATAAGCTC ATTGCAGAAG
AATCTTATAC CACCATACCT ATACAGGAAA AGACCATAGC GCAGGATGAT AATCCAAAAG ATGTTCAACA ACAGGATGAT
CTTCCAGAGA AGCCACCAGT TGCTGTGAAT AAACCTAAAT ATAGGCATGA ATTCTACCAG AAACCTGATC AGGTGGTTGT
AACCATATTT GCAAAGAAAA TCCCCAAGGA AAGCATAACT GTTGAATTTG GCGAACAAAT ACTAAGTGTT AGTATTAATG
TCCCAGGGGA AGATGCATAT GTTTTTCAAA CTCGCTTATT TGGAAAGATT GTACCCTCCA ATTGCCGGTA TGATGTATTA
TCAACCAAAA TTGAAATTCG CCTTGAGAAA GCGGAACCTA TTCATTGGTC ATCTCTTGAA TTCACCAAAA ACGTTGTAGT
TCCACAGATG GTTAATGCCT CTTCAGTTAC TGCAAGTCAT AGACCTTCTT ACCCGTCCTC AAAACAAACC AGAGATTGGG
ACAAGATCGA AGCTCAAGTC AAGAAAGAGG AGAAAGATGA AAAGCTCGAC GGGGATGCTG CATTGAACAA ATTTTTCCGG
GAAATATACC AAGATGCAGA TGAGGATACC AGAAGAGCAA TGAAAAAGTC ATTTGTGGAG TCTAATGGAA CTGTGCTGTC
TACAAACTGG AAAGAAGTGG GATCAAAGAA GGTGGAGGGA AGTCCTCCTG ATGGCATGGA GTTGAAAAAA TGGGAATATT
AAGATACTTT CTGAATCAAT GTTTATATAT AATTTGGTGT GGGATTATGC TTTTAATGCT TTCTGTTGGT TAGTTAACTG
CTGAACTAGA GATCTTATTT TATTCGAATT TTTTTTTCAT AAGGTTTGTC CGTCTTCGCT TGGACCTGAA TTCATGGTTG
TTGGTTGAGG ACAAGGCTGT TCATATTTGG TTAATATAAT GCAACTTTCT GGTTTATCTT CCCTTGAGTC ATTCTTTATA
TTAATACAGC TGAACCAATG TTAGTGGAAG ATGGACCATA ATTGTTGAAG GA

>Vigan.11G168600.01
ATGGCTTCCG ATCTTGAAGC GAGAGCCAAA GAAGCCTTTG TCGAAGACCA CTTCGAACTC GCAGTGGACC TTCTATCTCA
GGCAATTAAC CTCGAACCCA ACAAAGCTGA ACTCTATGCC GACCGCGCTC AAGGCAACAT CAAATTGAAC AACTTAACTG
AGGCTGTTGC TGATGCTAAC AAAGCAATTG AATTGAATCC TTCTCTGCCA AAAGCATATC TACGGAAAGG TACTGCATGC
TTGAAGCTTG AGGAGTATCA GACGGCCAAG GCTGCTCTGG AGACTGGTGC TTCATTGTCT CCAGACAACC CAAGATTTGT
TAATTTAATC AAAGAGTGTG ATAAGCTCAT TGCAGAAGAA TCTTATACCA CCATACCTAT ACAGGAAAAG ACCATAGCGC
AGGATGATAA TCCAAAAGAT GTTCAACAAC AGGATGATCT TCCAGAGAAG CCACCAGTTG CTGTGAATAA ACCTAAATAT
AGGCATGAAT TCTACCAGAA ACCTGATCAG GTGGTTGTAA CCATATTTGC AAAGAAAATC CCCAAGGAAA GCATAACTGT
TGAATTTGGC GAACAAATAC TAAGTGTTAG TATTAATGTC CCAGGGGAAG ATGCATATGT TTTTCAAACT CGCTTATTTG
GAAAGATTGT ACCCTCCAAT TGCCGGTATG ATGTATTATC AACCAAAATT GAAATTCGCC TTGAGAAAGC GGAACCTATT
CATTGGTCAT CTCTTGAATT CACCAAAAAC GTTGTAGTTC CACAGATGGT TAATGCCTCT TCAGTTACTG CAAGTCATAG
ACCTTCTTAC CCGTCCTCAA AACAAACCAG AGATTGGGAC AAGATCGAAG CTCAAGTCAA GAAAGAGGAG AAAGATGAAA
AGCTCGACGG GGATGCTGCA TTGAACAAAT TTTTCCGGGA AATATACCAA GATGCAGATG AGGATACCAG AAGAGCAATG
AAAAAGTCAT TTGTGGAGTC TAATGGAACT GTGCTGTCTA CAAACTGGAA AGAAGTGGGA TCAAAGAAGG TGGAGGGAAG
TCCTCCTGAT GGCATGGAGT TGAAAAAATG GGAATATTAA 

>Vigan.11G168600.01
MASDLEARAK EAFVEDHFEL AVDLLSQAIN LEPNKAELYA DRAQGNIKLN NLTEAVADAN KAIELNPSLP KAYLRKGTAC
LKLEEYQTAK AALETGASLS PDNPRFVNLI KECDKLIAEE SYTTIPIQEK TIAQDDNPKD VQQQDDLPEK PPVAVNKPKY
RHEFYQKPDQ VVVTIFAKKI PKESITVEFG EQILSVSINV PGEDAYVFQT RLFGKIVPSN CRYDVLSTKI EIRLEKAEPI
HWSSLEFTKN VVVPQMVNAS SVTASHRPSY PSSKQTRDWD KIEAQVKKEE KDEKLDGDAA LNKFFREIYQ DADEDTRRAM
KKSFVESNGT VLSTNWKEVG SKKVEGSPPD GMELKKWEY*