VIGGS:GBrowse

Vigan.11G170100.01

Basic Information:

Name:	Vigan.11G170100.01 Multiple alignment Variant Information
Position:	Chr11:28352674..28358716 (- strand)
Length:	6043

Functional Information:

Description:	Similar to NADH dehydrogenase, putative. [B9RIR5, Ricinus communis]
GO:	Biological Process: respiratory electron transport chain (GO:0022904)
	Cellular Component: mitochondrial inner membrane (GO:0005743)
	Molecular Function: oxidoreductase activity, acting on NAD(P)H (GO:0016651)
InterPro:	ETC complex I subunit (IPR006806)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:423.05,306.24,130.72,95.47,199.38,302.43,102.87,86.58
Arabidopsis thaliana homolog:	AT5G52840.1

Automatic updates:

Name:	NM_001249938 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100526984 (LOC100526984), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:28352674..28352887 (- strand)
Length:	214
Type:	three_prime_UTR

Position:	Chr11:28352888..28353084 (- strand)
Length:	197
Type:	CDS

Position:	Chr11:28358267..28358579 (- strand)
Length:	313
Type:	CDS

Position:	Chr11:28358580..28358716 (- strand)
Length:	137
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G170100.01
TTGGGCCATT TGGGCCAAGG AGCTACAGGC CCAGTTTGTG GCCTCTCCAT TTCGTACCCA CCCACGCTCT CATTTCTCCG
AGACTCGAAC AGCATCGTGT TTGGAGACAT TGGCGGAGAG TGAGATCGGA AGGGAAGATG TTTCTACGTG CGGTGGCGCG
GCCGTTGATG GCGAAGGTTA AGGCTTCGAC GGGGATCGTG GGGTTGGAGG TGGTTCCGAA CGCGAGGGAG GTGCTGATCG
GACTCTACAG CAAGACGCTG AAGGAGATCC AGAAGGTTCC AGAAGACGAG GGTTACCGCA AGGCGGTGGA GAGCTTCACG
AAACACCGGC TGAGCGTGTG CAAAGAGGAG GAGGACTGGG AAGCCATCGA GAAACGGCTT TGTTGCGGCC AGGTCGAGGA
ACTCATCGAA GAGGCTCAGG ATGAGCTCAA GCTCATTTCC TACATGATCG AGTGGGATCC CTGGGGTGTT CCAGATGATT
ACGAATGTGA GGTGATTGAG AATGATGCAC CTGTTCCTAA GCATGTTCCT CTCCACCGAC CACCTCCTCT CCCTACAGAA
TTTCACAAGA CACTAGAGGC ACTTTCGTCT CAATCAGGAA AAGATATTCC TGTTGCTAGC TCTACTGAAT CAACGTCCAA
GACATGATTT GCACCCTCAT TAGATCTTTT GTTTCTCCCT TTCACCATAT TTTTCTTTTC CGTGTTGAAC TATTGCAGTT
TGCATGAACT ATAACCTGAA GCAGTTTTTT TTGGGAGAAA ACCTGGCTTC TAAATAACTT GAATGGTTTG GAATAACAAA
TGTTTATTGT TTTAACTTTT CAAGTAAATA ATATTATGCA TGGAATAATT TAGTTCACAC A

[show][hide][copy]CDS

>Vigan.11G170100.01
ATGTTTCTAC GTGCGGTGGC GCGGCCGTTG ATGGCGAAGG TTAAGGCTTC GACGGGGATC GTGGGGTTGG AGGTGGTTCC
GAACGCGAGG GAGGTGCTGA TCGGACTCTA CAGCAAGACG CTGAAGGAGA TCCAGAAGGT TCCAGAAGAC GAGGGTTACC
GCAAGGCGGT GGAGAGCTTC ACGAAACACC GGCTGAGCGT GTGCAAAGAG GAGGAGGACT GGGAAGCCAT CGAGAAACGG
CTTTGTTGCG GCCAGGTCGA GGAACTCATC GAAGAGGCTC AGGATGAGCT CAAGCTCATT TCCTACATGA TCGAGTGGGA
TCCCTGGGGT GTTCCAGATG ATTACGAATG TGAGGTGATT GAGAATGATG CACCTGTTCC TAAGCATGTT CCTCTCCACC
GACCACCTCC TCTCCCTACA GAATTTCACA AGACACTAGA GGCACTTTCG TCTCAATCAG GAAAAGATAT TCCTGTTGCT
AGCTCTACTG AATCAACGTC CAAGACATGA

[show][hide][copy]PROTEIN

>Vigan.11G170100.01
MFLRAVARPL MAKVKASTGI VGLEVVPNAR EVLIGLYSKT LKEIQKVPED EGYRKAVESF TKHRLSVCKE EEDWEAIEKR
LCCGQVEELI EEAQDELKLI SYMIEWDPWG VPDDYECEVI ENDAPVPKHV PLHRPPPLPT EFHKTLEALS SQSGKDIPVA
SSTESTSKT*