GBrowse Details

Vigan.11G172900.01

Basic Information:
Name: Vigan.11G172900.01
Multiple alignment
Variant Information
Position: Chr11:28661324..28673362 (+ strand)
Length: 12039
Functional Information:
Description: Similar to Uncharacterized protein. [Q0PJI5, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.36,21.43,15.31,22.67,7.10,6.61,8.29,7.22
Automatic updates:
Name: NM_001249038 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB136 (MYB136), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253119 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor ASG4-like (LOC100783949), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:28661324..28661434 (+ strand)
Length: 111
Type: five_prime_UTR
Position: Chr11:28661435..28661667 (+ strand)
Length: 233
Type: CDS
Position: Chr11:28663544..28663601 (+ strand)
Length: 58
Type: CDS
Position: Chr11:28665982..28666105 (+ strand)
Length: 124
Type: CDS
Position: Chr11:28666185..28666349 (+ strand)
Length: 165
Type: CDS
Position: Chr11:28666502..28666615 (+ strand)
Length: 114
Type: CDS
Position: Chr11:28667146..28667255 (+ strand)
Length: 110
Type: CDS
Position: Chr11:28667795..28667854 (+ strand)
Length: 60
Type: CDS
Position: Chr11:28672858..28672917 (+ strand)
Length: 60
Type: CDS
Position: Chr11:28672918..28673362 (+ strand)
Length: 445
Type: three_prime_UTR


>Vigan.11G172900.01
CGCCAGTCGT ACACCATACC TAACAATTGT TCTTACATAA ATTTGCCATA CGTTTCGCCA CAAATTCAAC GTTAAATCTC
TCTCTCCTCT TTCTCTCTCT AGAATCTTTG AATGGTATCC AAAAACCCGA ACCCGCCGGA GGGATTCTAC TTGGATCCGA
CTGCCATGGC TCTCCCAGGG ATGCCTCCCT TCGCCTCCGT CTCTGCTGCT GCTGCTGCCG CCGTCTCCGC CTCCAACTCC
TCGGAAGATG CAGCCAAGAA GATCCGTAAG CCCTACACTA TCACCAAGTC GCGGGAGAAC TGGACCGAAC CAGAACACGA
CAAGTTCCTC GAAGCCCTTC AACTGTTTGA CCGTGACTGG AAAAAGATTG AAGCATTTGT TGGATCAAAG ACTGTTATAC
AGATACGTAG TCATGCACAG AAATACTTTC TCAAAGTTCA GAAGAGTGGA GCAAGTGAAC ATCTTCCGCC TCCCAGACCT
AAAAGAAAAG CAGCACATCC ATATCCCCAA AAAGCTTCCA GAAATGCTCC TATACTCCCA CAAGTATCAG GATCTTTTCA
ATCTTCATCT TCTTTGCTTG AACCTGGATA TATCCTGAAA AATGATTCCC CAGCAATGCT TAAAATTCCT ATGAATACTG
TGGTGTCATC CTGGTCAAAC AACACCTTGC AAACTGTCAA TTTATCCCCT GTGACAAAAG TGAATAATCC TTGCAGTAGT
GGTGAAAGCA CTCCTAAAGT GCGCCCAGCT GTTGAATCTC ATGGTCAAGG ACCTCATCAA GGGAATAAAA TCCATCCATT
GAGAGTTCTT CCAGATTTTA CTCAGGTATA TGGTTTCATA GGCAGTGTAT TTGATCCAAA TGCAACTGAA CATCTGCAGA
AGCTAAAAAA GATGGACCGT ATAGACGTTG AGACAGTGCT ACTGCTAATG AGAAACCTGT CTATCAATTT AACTAGCCCA
GATTTTGAGG ATCATAGGAA GTTGCTTTCA TCATATGAGG TTGAACCAGA GAGAAATAAC TATCAATGTG GATAGAGTAT
GCACAATAAC AAGTTGAAGA GTGCTAATGA GATGGAGGCA GAAAGTGGCT TCTTCTCCCA TCAATCTTCC ATGATTTGGT
AAGAGCTCAT GGAAAGGCAC AAAGTGGAGA TGTTGGAGTA ACAGCTAAAT TTTTACCCTG CTCTTGGTTC TTATTGCTGT
TGCTCATCAT TGTAGCTAAG GAAATCGTTA ATTCTCATAA TTCAATCATG ACTTTGCGTA TATATGAATC AACCTTTCAA
AAAGAAAACA ATAATGTGAG AATGTATATA GCTATTTCTT AGTTTTATAG CACCAATAGT GTATTAAATT CAACCAAATA
TCAAATATTT GGAAACAAGA ATGTTATATT CTAGTTTTGT GAATGTCTGT ACAGCTCCTA ATATTTCTGT TAGGTTCAAC
CAAACATTGA ATACTTGGAA CCAAGAATAT TAAATTTACC 

>Vigan.11G172900.01
ATGGTATCCA AAAACCCGAA CCCGCCGGAG GGATTCTACT TGGATCCGAC TGCCATGGCT CTCCCAGGGA TGCCTCCCTT
CGCCTCCGTC TCTGCTGCTG CTGCTGCCGC CGTCTCCGCC TCCAACTCCT CGGAAGATGC AGCCAAGAAG ATCCGTAAGC
CCTACACTAT CACCAAGTCG CGGGAGAACT GGACCGAACC AGAACACGAC AAGTTCCTCG AAGCCCTTCA ACTGTTTGAC
CGTGACTGGA AAAAGATTGA AGCATTTGTT GGATCAAAGA CTGTTATACA GATACGTAGT CATGCACAGA AATACTTTCT
CAAAGTTCAG AAGAGTGGAG CAAGTGAACA TCTTCCGCCT CCCAGACCTA AAAGAAAAGC AGCACATCCA TATCCCCAAA
AAGCTTCCAG AAATGCTCCT ATACTCCCAC AAGTATCAGG ATCTTTTCAA TCTTCATCTT CTTTGCTTGA ACCTGGATAT
ATCCTGAAAA ATGATTCCCC AGCAATGCTT AAAATTCCTA TGAATACTGT GGTGTCATCC TGGTCAAACA ACACCTTGCA
AACTGTCAAT TTATCCCCTG TGACAAAAGT GAATAATCCT TGCAGTAGTG GTGAAAGCAC TCCTAAAGTG CGCCCAGCTG
TTGAATCTCA TGGTCAAGGA CCTCATCAAG GGAATAAAAT CCATCCATTG AGAGTTCTTC CAGATTTTAC TCAGGTATAT
GGTTTCATAG GCAGTGTATT TGATCCAAAT GCAACTGAAC ATCTGCAGAA GCTAAAAAAG ATGGACCGTA TAGACGTTGA
GACAGTGCTA CTGCTAATGA GAAACCTGTC TATCAATTTA ACTAGCCCAG ATTTTGAGGA TCATAGGAAG TTGCTTTCAT
CATATGAGGT TGAACCAGAG AGAAATAACT ATCAATGTGG ATAG

>Vigan.11G172900.01
MVSKNPNPPE GFYLDPTAMA LPGMPPFASV SAAAAAAVSA SNSSEDAAKK IRKPYTITKS RENWTEPEHD KFLEALQLFD
RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KSGASEHLPP PRPKRKAAHP YPQKASRNAP ILPQVSGSFQ SSSSLLEPGY
ILKNDSPAML KIPMNTVVSS WSNNTLQTVN LSPVTKVNNP CSSGESTPKV RPAVESHGQG PHQGNKIHPL RVLPDFTQVY
GFIGSVFDPN ATEHLQKLKK MDRIDVETVL LLMRNLSINL TSPDFEDHRK LLSSYEVEPE RNNYQCG*