GBrowse Details

Vigan.11G174100.01

Basic Information:
Name: Vigan.11G174100.01
Multiple alignment
Variant Information
Position: Chr11:28834220..28838593 (- strand)
Length: 4374
Functional Information:
Description: Similar to SNARE family protein. [B9HAR1, Populus trichocarpa]
GO: Biological Process: transport (GO:0006810)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Synaptobrevin (IPR001388)
Longin domain (IPR010908)
Longin-like domain (IPR011012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:58.05,53.11,68.82,54.46,66.88,65.78,74.70,71.61
Arabidopsis thaliana homolog: AT5G58060.2
Automatic updates:
Name: NM_001250290 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative vesicle-associated membrane protein (LOC100306336), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251163 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499670 (LOC100499670), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:28834220..28834663 (- strand)
Length: 444
Type: three_prime_UTR
Position: Chr11:28834664..28834714 (- strand)
Length: 51
Type: CDS
Position: Chr11:28836656..28836742 (- strand)
Length: 87
Type: CDS
Position: Chr11:28837288..28837353 (- strand)
Length: 66
Type: CDS
Position: Chr11:28837508..28837612 (- strand)
Length: 105
Type: CDS
Position: Chr11:28837801..28837898 (- strand)
Length: 98
Type: CDS
Position: Chr11:28838207..28838399 (- strand)
Length: 193
Type: CDS
Position: Chr11:28838400..28838593 (- strand)
Length: 194
Type: five_prime_UTR


>Vigan.11G174100.01
ATAATAATTA GTTATAATTA TGGTTAGTGT TGTTATTATA TAAATAAAAT TATGCAACTA CACACGTCAA TATTTTTTGT
AATAGAGAGA GCCATTTTTT CTGTTTCCGA TCTGCTGTCT TTCTTTCTCG TTGTAGTGTT ACAATTTTTC AGAGATAGAG
AGAGAGAAAA TCTAGAGCGA GAGATAGAGA AAAGATGAAG ATCACAGCGT TGTTGGTGCT TAAATGCACA GGTGAAGGTT
CCGATCCCGT GATTCTCGCG AACGCTTCCG ATGTTAGCCA CTTCGGCTAC TTTCAACGCC ATAGCGTCAG GGAGTTCATC
GTCTTTGTCG GTCGTACCGT CGCCAAACGC ACCCCTCAAG GCCAACGCCA ATCTGTACAA CACGAAGAAT ATAAGGTGCA
CACCTATAAC AGAAATGGTC TTTGTGCGTT GGGATTTATG GATGATCATT ACCCGATTCG AAGTGCCTTT TCTCTTCTAA
ACCAGGTGAT AGATGAATAT CAAAAAGCTT TTGGTGAGTC ATGGAGAACT GTACAGGAAG ACGGTACTCA ACCATGGCCC
TATTTGAATG AAGCTCTGAC AAAATTCCAG GATCCTGCAG AGGCTGACAA ATTGTTGAAA ATCCAGAGAG AGTTAGATGA
AACAAAAATC ATCCTTCATA AGACTATTGA TAGTGTGCTG GCTAGAGGGG AGAAGCTGGA CAGTTTAGTT GAGAAGAGTT
CTGATCTGAG TGCCGCATCC CAGATGTTCT ATAAACAAGC CAAGAAAACC AATCAGTGTT GTACTATATT GTAAGCTTTG
ACCATCAATA TGCTGCGAGC TTACTTGAAT CCTGTTCCGA CATGGAGATT ATTGTTGGAC AGGAGAAAAT AGCTTCATAT
GTCTATCACT TTACATTGTT TGGTTGGTGA AATTATGATG TGATTTACCT GATATATGTA TTGTCTTACC GTGTGACAAA
TTCAAATACC CATTTACCTT GTGATGTTCA CTATGATAAT TTATAGTATC CATAAGTTAT TGTTCTGGTT GAGTCATTCC
ATGTTAGTTT GTTGTTAGAT ATTGACATTG ACACCCTCTT TCGCGTTTTT TTTTCTTGAC CTTGGGGTGG TTTTTGCCAT
CCTATTCAGA CAAGAAGATG CTCCATTTAA TTAGAATTTA CATTTGGTTT GTAAAAGATG GAAATTGAGA TGCTGATTGG
TAGGCTGGTG AATAAACTTT TATATAAATG AGTCTTCG

>Vigan.11G174100.01
ATGAAGATCA CAGCGTTGTT GGTGCTTAAA TGCACAGGTG AAGGTTCCGA TCCCGTGATT CTCGCGAACG CTTCCGATGT
TAGCCACTTC GGCTACTTTC AACGCCATAG CGTCAGGGAG TTCATCGTCT TTGTCGGTCG TACCGTCGCC AAACGCACCC
CTCAAGGCCA ACGCCAATCT GTACAACACG AAGAATATAA GGTGCACACC TATAACAGAA ATGGTCTTTG TGCGTTGGGA
TTTATGGATG ATCATTACCC GATTCGAAGT GCCTTTTCTC TTCTAAACCA GGTGATAGAT GAATATCAAA AAGCTTTTGG
TGAGTCATGG AGAACTGTAC AGGAAGACGG TACTCAACCA TGGCCCTATT TGAATGAAGC TCTGACAAAA TTCCAGGATC
CTGCAGAGGC TGACAAATTG TTGAAAATCC AGAGAGAGTT AGATGAAACA AAAATCATCC TTCATAAGAC TATTGATAGT
GTGCTGGCTA GAGGGGAGAA GCTGGACAGT TTAGTTGAGA AGAGTTCTGA TCTGAGTGCC GCATCCCAGA TGTTCTATAA
ACAAGCCAAG AAAACCAATC AGTGTTGTAC TATATTGTAA 

>Vigan.11G174100.01
MKITALLVLK CTGEGSDPVI LANASDVSHF GYFQRHSVRE FIVFVGRTVA KRTPQGQRQS VQHEEYKVHT YNRNGLCALG
FMDDHYPIRS AFSLLNQVID EYQKAFGESW RTVQEDGTQP WPYLNEALTK FQDPAEADKL LKIQRELDET KIILHKTIDS
VLARGEKLDS LVEKSSDLSA ASQMFYKQAK KTNQCCTIL*