GBrowse Details

Vigan.11G175300.01

Basic Information:
Name: Vigan.11G175300.01
Multiple alignment
Variant Information
Position: Chr11:29014588..29021459 (+ strand)
Length: 6872
Functional Information:
Description: Similar to Uncharacterized protein. [I1J700, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Aldo/keto reductase (IPR001395)
Aldo/keto reductase, conserved site (IPR018170)
Aldo/keto reductase subgroup (IPR020471)
NADP-dependent oxidoreductase domain (IPR023210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.24,14.12,17.47,25.91,43.08,22.38,0.27,50.46
Arabidopsis thaliana homolog: AT2G37770.2, AT2G37790.1
Automatic updates:
Name: NM_001253147 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aldo-keto reductase family 4 member C9-like (LOC100781137), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:29014588..29014700 (+ strand)
Length: 113
Type: five_prime_UTR
Position: Chr11:29014701..29014820 (+ strand)
Length: 120
Type: CDS
Position: Chr11:29019416..29019466 (+ strand)
Length: 51
Type: CDS
Position: Chr11:29019613..29019689 (+ strand)
Length: 77
Type: CDS
Position: Chr11:29019789..29019876 (+ strand)
Length: 88
Type: CDS
Position: Chr11:29020188..29020463 (+ strand)
Length: 276
Type: CDS
Position: Chr11:29020605..29020853 (+ strand)
Length: 249
Type: CDS
Position: Chr11:29021054..29021140 (+ strand)
Length: 87
Type: CDS
Position: Chr11:29021141..29021459 (+ strand)
Length: 319
Type: three_prime_UTR


>Vigan.11G175300.01
GACAGAAACA AACTCTATAA CAGACTCTGC CACCCACAGT GAGGCAAGAA AAGTCCATTC TCTTTTTCTA CATTTTTCAG
CGGCACCATT GAAGCTTTCG GTTTGCGAGA CAAATGTCGA ACGATATTCG ATTCTTCGAC CTCAACACGG GAGCCAAGAT
CCCTGCCATC GCCTTGGGAA CCTGGCAATC CGATCCCGGC GTTGTTGCTC AAGCCGTCGC TGCTGCCATC AAGATTGGTT
ACCGCCACAT CGATTGTGCT CACATCTATG AGAACGAGAA GGAGATTGGC TCTATGTTGA AGAAGCTGTT TGAGGAGGGT
GTAGTGAAGC GCGAGGATTT GTGGATTACA TCTAAACTCT GGAATACTGA TCATGCTCCA GAAGATGTAC CGCTGGCATT
GGACAGGACT TTGAAAGATT TGCAGCTTGA TTATGTAGAC TTGTATCTTA TCCACTGGCC AACTCCAATG AAAAAAGGAA
CACAAGGCTT TAATCCTGAA AATCTTGTGC AAGCAAACAT ACCTAACACA TGGAAGGCAA TGGAAGCACT CTTTGACTCT
GGCAAGGCTC GGGCTATAGG CGTAAGCAAT TTTTCCACCA AAAAGCTGGC AGATTTGCTG GAAGTTGCTC GTGTTCCTCC
TGCTGTCAAC CAGGTGGAGT GTCATCCTTC ATGGCAGCAA GAGAAGCTGA GAGCTTTCTG CAAATCCAAA GGTGTCCACC
TCTCTGGATA TTCACCTTTG GGTTCCCCTG GAACACCCTG GCTTAAAAGT GACGTCCTTA AGCACCCAGT TTTAAATACG
ACTGCGAAGA AGCTAGGCAA AACTCCTGCA CAAGTAGCTC TTCGCTGGGG ACTTCAAATG GGTCAAAGTG TGCTTCCCAA
GAGTACAAAC GAAGCACGGA TAAAGGAGAA TTTTGATATT TTTGGCTGGT CTATCCCTGC GGACTTACTC GCTAAATTTT
CTGAGATTCA GCAGGCAAGA TTACTGAGGG GTACCACATT CGTCCATGAA ACTTGGGGTG CCTACAAAAC TGTCGAGGAA
TTATGGGATG GTGAAATCTG AGCATCTGCT ATGTTTGTTC GATGGAGTGA ATGGAACGTG GAGTAGGAGT TCGTCACTGT
CTTTGGGTGT AGGGTTCTGA GAAACTCTGA ATAGGTGCAC TGTTCAATTG TTGATTTTAG CAAATTATAT TAAATTACTG
GTTGGATCAA ACTTAGCATC TTGACACTCA TTCATATTTC TCTTTGATAT ACAATTGAGT GATTTTCATT AAGGATACGT
TTGCTACAGA ATTAAGTAAA AAAAAATGAA ATAACAATGA ATAAAAATCT TATATAATTT AATTAATTGT TATTTTTATT
TAATAATCAT ATATGACAAT 

>Vigan.11G175300.01
ATGTCGAACG ATATTCGATT CTTCGACCTC AACACGGGAG CCAAGATCCC TGCCATCGCC TTGGGAACCT GGCAATCCGA
TCCCGGCGTT GTTGCTCAAG CCGTCGCTGC TGCCATCAAG ATTGGTTACC GCCACATCGA TTGTGCTCAC ATCTATGAGA
ACGAGAAGGA GATTGGCTCT ATGTTGAAGA AGCTGTTTGA GGAGGGTGTA GTGAAGCGCG AGGATTTGTG GATTACATCT
AAACTCTGGA ATACTGATCA TGCTCCAGAA GATGTACCGC TGGCATTGGA CAGGACTTTG AAAGATTTGC AGCTTGATTA
TGTAGACTTG TATCTTATCC ACTGGCCAAC TCCAATGAAA AAAGGAACAC AAGGCTTTAA TCCTGAAAAT CTTGTGCAAG
CAAACATACC TAACACATGG AAGGCAATGG AAGCACTCTT TGACTCTGGC AAGGCTCGGG CTATAGGCGT AAGCAATTTT
TCCACCAAAA AGCTGGCAGA TTTGCTGGAA GTTGCTCGTG TTCCTCCTGC TGTCAACCAG GTGGAGTGTC ATCCTTCATG
GCAGCAAGAG AAGCTGAGAG CTTTCTGCAA ATCCAAAGGT GTCCACCTCT CTGGATATTC ACCTTTGGGT TCCCCTGGAA
CACCCTGGCT TAAAAGTGAC GTCCTTAAGC ACCCAGTTTT AAATACGACT GCGAAGAAGC TAGGCAAAAC TCCTGCACAA
GTAGCTCTTC GCTGGGGACT TCAAATGGGT CAAAGTGTGC TTCCCAAGAG TACAAACGAA GCACGGATAA AGGAGAATTT
TGATATTTTT GGCTGGTCTA TCCCTGCGGA CTTACTCGCT AAATTTTCTG AGATTCAGCA GGCAAGATTA CTGAGGGGTA
CCACATTCGT CCATGAAACT TGGGGTGCCT ACAAAACTGT CGAGGAATTA TGGGATGGTG AAATCTGA

>Vigan.11G175300.01
MSNDIRFFDL NTGAKIPAIA LGTWQSDPGV VAQAVAAAIK IGYRHIDCAH IYENEKEIGS MLKKLFEEGV VKREDLWITS
KLWNTDHAPE DVPLALDRTL KDLQLDYVDL YLIHWPTPMK KGTQGFNPEN LVQANIPNTW KAMEALFDSG KARAIGVSNF
STKKLADLLE VARVPPAVNQ VECHPSWQQE KLRAFCKSKG VHLSGYSPLG SPGTPWLKSD VLKHPVLNTT AKKLGKTPAQ
VALRWGLQMG QSVLPKSTNE ARIKENFDIF GWSIPADLLA KFSEIQQARL LRGTTFVHET WGAYKTVEEL WDGEI*