GBrowse Details

Vigan.11G175600.01

Basic Information:
Name: Vigan.11G175600.01
Multiple alignment
Variant Information
Position: Chr11:29038791..29041844 (- strand)
Length: 3054
Functional Information:
Description: Similar to Uncharacterized protein. [G4Y9K1, Glycine max]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Fatty acid hydroxylase (IPR006694)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.65,55.44,97.16,28.94,7.43,14.59,2.73,14.33
Automatic updates:
Name: NM_001253005 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max beta-carotene hydroxylase 2, chloroplastic-like (LOC100813368), mRNA.
PubMed ID: 23700351 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:29038791..29039181 (- strand)
Length: 391
Type: three_prime_UTR
Position: Chr11:29039182..29039265 (- strand)
Length: 84
Type: CDS
Position: Chr11:29039432..29039488 (- strand)
Length: 57
Type: CDS
Position: Chr11:29039970..29040095 (- strand)
Length: 126
Type: CDS
Position: Chr11:29040287..29040421 (- strand)
Length: 135
Type: CDS
Position: Chr11:29040737..29040808 (- strand)
Length: 72
Type: CDS
Position: Chr11:29040941..29041000 (- strand)
Length: 60
Type: CDS
Position: Chr11:29041230..29041616 (- strand)
Length: 387
Type: CDS
Position: Chr11:29041617..29041844 (- strand)
Length: 228
Type: five_prime_UTR


>Vigan.11G175600.01
ATTGTTTAAA AAAATAAAAA ATTATCCATT GGTTGTGTCA GCGCATTTCA GCAATATTTT TCTCTGTTTC TACAGTGTCA
CCCACACAAA AGAACGAAAG AGAAAAATTG TGGACTCTGT TCATCCCCTT TTAAAACCTT CACTTCAAAC CTTTCCTCTT
CACACACAAC ACAAATACCT CTCTCTTTCT CTCTCTCTCT CTCTTACACA CTCACACACA CTTCAACCAT GGCGGTAGGA
CTCTCCGCCG CCATAACCTT GAAGCCCTTC CTCCGCTACC ACCATCCCCA CTTTCCCAAA CCAATTCCAG CCACACTTCC
TTTCTCTCCC TTGAGAAATT CCCACCACAC AACCTTCTTG AAGACCCAAA AGTTGTCACC TTTCACTGTC TCTGTCCTAA
CGCAGGACCC CAAAAAAAGC ACCCACATGG AAATTGAGGA CCAGGAGCAG CCATCACCTT CTCCTCCACA AGTCTTGTCA
CCAAAGTTGG CGGAGAAGCT AGCCAGAAAA GAGTCTGAGA GGTTCACCTA CCTTGTCGCT GCTGTCATGT CCAGCTTCGG
GGTCACATCC ATGGCAGTGC TCGCTGTTTA TTACAGATTC GCGTGGCAAA TGGAGGGTGG AGAAGTGCCT TGGTCTGAAA
TGTTTGGCAC ATTTGCTCTG TCAGTGGGTG CTGCTGTGGG TATGGAGTTT TGGGCTAGAT GGGCTCATAA AGCTCTCTGG
CATGCTTCCT TGTGGCACAT GCATGAGTCC CACCATCGAC CAAGAGAAGG ACCCTTCGAA CTGAACGATG TATTTGCCAT
AATCAATGCT GTCCCTGCCA TCGCTCTCCT TTCCTACGGT TTCTTTCACA AGGGACTCTT CCCTGGCCTT TGCTTCGGTG
CGGGTCTTGG AATTACTGTC TTTGGGATGG CCTACATGTT TGTACACGAT GGCTTGGTTC ATAAGAGATT CCCTGTGGGC
CCCATTGCCA ACGTGCCCTA TTTAAGAAGA GTGGCTTCTG CTCACCAACT TCACCATTCA GAAAAATTTG ATGGTGTGCC
GTATGGGCTG TTTATGGGAC CAAAGGAAGT TGAAGAAGTG GGAGGGCTAG AAGAGCTGGA GAAAGAGATA AGTAGGAGAG
CAAGATTACA CAAAAACAGT TCATCATAAA AGCTAGTACA AATCCTTAAT TAGCTGTTTC AAAGAATCAC CAATGTAAAG
CAGAAATGTG AAATAAATTG ATCCAAAAAA TTTTGCTAGC ATATACATAT ATAAAATCCT TTACAGCATG ACATAACATC
AAAGATAAAC ATGAAATAAC AGTAATAAAG AAAAGGTGGT GGTTGCAAAC ATTTCTGCAA ACATTTTCTT ATTCTGAGGT
TTATTCTCTG TGTGATGAAG TCCAAAACAT GACTATAAAA GTTAGGAGTG ACAAAATGTA TTAACCCGAT TTGGTTAAGT
TTTGTTTCGA CGTGGTTAAA AATAGGTTGG AATTGGATGA GGTCAATTGA AAACAGATTA AACTTTATAA TCTGATTGGC
TAATGGATTT GTTTTTTTTT 

>Vigan.11G175600.01
ATGGCGGTAG GACTCTCCGC CGCCATAACC TTGAAGCCCT TCCTCCGCTA CCACCATCCC CACTTTCCCA AACCAATTCC
AGCCACACTT CCTTTCTCTC CCTTGAGAAA TTCCCACCAC ACAACCTTCT TGAAGACCCA AAAGTTGTCA CCTTTCACTG
TCTCTGTCCT AACGCAGGAC CCCAAAAAAA GCACCCACAT GGAAATTGAG GACCAGGAGC AGCCATCACC TTCTCCTCCA
CAAGTCTTGT CACCAAAGTT GGCGGAGAAG CTAGCCAGAA AAGAGTCTGA GAGGTTCACC TACCTTGTCG CTGCTGTCAT
GTCCAGCTTC GGGGTCACAT CCATGGCAGT GCTCGCTGTT TATTACAGAT TCGCGTGGCA AATGGAGGGT GGAGAAGTGC
CTTGGTCTGA AATGTTTGGC ACATTTGCTC TGTCAGTGGG TGCTGCTGTG GGTATGGAGT TTTGGGCTAG ATGGGCTCAT
AAAGCTCTCT GGCATGCTTC CTTGTGGCAC ATGCATGAGT CCCACCATCG ACCAAGAGAA GGACCCTTCG AACTGAACGA
TGTATTTGCC ATAATCAATG CTGTCCCTGC CATCGCTCTC CTTTCCTACG GTTTCTTTCA CAAGGGACTC TTCCCTGGCC
TTTGCTTCGG TGCGGGTCTT GGAATTACTG TCTTTGGGAT GGCCTACATG TTTGTACACG ATGGCTTGGT TCATAAGAGA
TTCCCTGTGG GCCCCATTGC CAACGTGCCC TATTTAAGAA GAGTGGCTTC TGCTCACCAA CTTCACCATT CAGAAAAATT
TGATGGTGTG CCGTATGGGC TGTTTATGGG ACCAAAGGAA GTTGAAGAAG TGGGAGGGCT AGAAGAGCTG GAGAAAGAGA
TAAGTAGGAG AGCAAGATTA CACAAAAACA GTTCATCATA A

>Vigan.11G175600.01
MAVGLSAAIT LKPFLRYHHP HFPKPIPATL PFSPLRNSHH TTFLKTQKLS PFTVSVLTQD PKKSTHMEIE DQEQPSPSPP
QVLSPKLAEK LARKESERFT YLVAAVMSSF GVTSMAVLAV YYRFAWQMEG GEVPWSEMFG TFALSVGAAV GMEFWARWAH
KALWHASLWH MHESHHRPRE GPFELNDVFA IINAVPAIAL LSYGFFHKGL FPGLCFGAGL GITVFGMAYM FVHDGLVHKR
FPVGPIANVP YLRRVASAHQ LHHSEKFDGV PYGLFMGPKE VEEVGGLEEL EKEISRRARL HKNSSS*