GBrowse Details

Vigan.11G193900.01

Basic Information:
Name: Vigan.11G193900.01
Multiple alignment
Variant Information
Position: Chr11:31778223..31782238 (- strand)
Length: 4016
Functional Information:
Description: Similar to Uncharacterized protein. [I1MQ30, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:89.91,11.76,25.03,102.04,40.27,52.25,35.72,22.85
Arabidopsis thaliana homolog: AT5G51970.1
Automatic updates:
Name: NM_001252732 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative sorbitol dehydrogenase (LOC100791559), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:31778223..31778507 (- strand)
Length: 285
Type: three_prime_UTR
Position: Chr11:31778508..31778700 (- strand)
Length: 193
Type: CDS
Position: Chr11:31779208..31779395 (- strand)
Length: 188
Type: CDS
Position: Chr11:31779665..31779955 (- strand)
Length: 291
Type: CDS
Position: Chr11:31781339..31781575 (- strand)
Length: 237
Type: CDS
Position: Chr11:31781828..31781895 (- strand)
Length: 68
Type: CDS
Position: Chr11:31782018..31782135 (- strand)
Length: 118
Type: CDS
Position: Chr11:31782136..31782238 (- strand)
Length: 103
Type: five_prime_UTR


>Vigan.11G193900.01
AGAAAGAATA AATCATTGTT CACTGCAGGG ATCACTTTGT CATAACTGAA AGTAGAAATC TTTCTATCAT AGAAAGTTGC
TAAAGATTAG AAAGAGAAGG GAAATGGGTA AGGGAGGAAT GTCAATTGAT GATAATGGAG AAGACAAAGA GCAGAATATG
GCTGCTTGGC TTCTGGGTAT AAACAATCTC AAGATTCAAC CTTTCGAGCT TCCTATTCTA GGACCCCATG ATGTCAGAGT
TAGAATGAAA GCTGTTGGGA TCTGTGGGAG TGATGTTCAC TACCTCAAGA CACTGAGGTG TGCACACTTC ATAGTTAAGG
AACCAATGGT AATTGGTCAT GAGTGTGCTG GGATCATAGA AGAAGTTGGT AGTGAGGTAA ACAATTTGGT GCCTGGTGAC
CGTGTGGCGC TTGAACCTGG GATCAGTTGC TGGCGATGCG GCCACTGCAA ACAGGGTCGA TATAATTTGT GTGATGAAAT
GAAGTTTTTT GCTACTCCAC CAGTTCATGG TTCCCTGGCT AATCAGATAG TGCATCCTGC AGACCTATGT TTTAAGCTTC
CAGACAACGT GAGTCTAGAG GAGGGGGCCA TGTGTGAACC CTTAAGTGTT GGTATTCATG CTTGTAGGAG AGCTAATATT
GGACCAGAAA CCAATGTGTT GATCATGGGA GCTGGACCCA TAGGACTTGT TACACTGCTT GCAGCTCGTG CTTTCGGAGC
ACCCAAGACT GTCATTGTTG ATGTTGATGA CTATCGTTTA TCTGTTGCAA AATCTCTTGG TGCAGATGAC ATTGTTAAAG
TCTCAACAAA CATTCAGGAT GTGGCTGAAG AAGTTGAGCT GATACAAAAG GTTATGGGAG CTTCTATAAA TGTTACCTTT
GATTGTGCTG GTTTTGACAA AACCATGTCT ACAGCATTGG GTGCTACTCA GCCTGGTGGC AAAGTTTGCC TAGTGGGAAT
GGGACATTCT GAAATGACTG TCCCACTCAC CCCTGCAGCA GCAAGGGAAG TTGATGTGAT TGGAGTTTTT CGCTATATGA
ACACATGGCC TCTTTGTCTT GAGTTTCTAA GGAGTGGGAA AATCGATGTA AAACCCCTTA TAACTCACAG GTTTGGGTTC
TCTCAAAAGG AAGTGGAAGA AGCTTTTGAA ACAAGTGCTC GTGGTGGTAC TGCCATCAAG GTCATGTTCA ATCTTTAGAA
ATTGTCTTAT TTTGAACAAA TCATATACTT TCATGCTCAT GCTCATGCTC ATGCTAAATA CCAATGTAAT GATCACTTGG
GTTATGAATA AAGTGGCTCC AAGAAGAACT TGTGAAAATG TGAATGGTAA CTGCAGCATC TACAGATTCA GTTATGAGGT
GAAACCTTTG CTTTGTGAAT GAGTAAACCT TCAAATTCGT TCATCAGTCA TTGAGAGATT AAATCTTCAT TCTTGGTTCT
TAAGAATCAT GAATGCTGCA CACAAATAAT TTGAATACTA CTC

>Vigan.11G193900.01
ATGGGTAAGG GAGGAATGTC AATTGATGAT AATGGAGAAG ACAAAGAGCA GAATATGGCT GCTTGGCTTC TGGGTATAAA
CAATCTCAAG ATTCAACCTT TCGAGCTTCC TATTCTAGGA CCCCATGATG TCAGAGTTAG AATGAAAGCT GTTGGGATCT
GTGGGAGTGA TGTTCACTAC CTCAAGACAC TGAGGTGTGC ACACTTCATA GTTAAGGAAC CAATGGTAAT TGGTCATGAG
TGTGCTGGGA TCATAGAAGA AGTTGGTAGT GAGGTAAACA ATTTGGTGCC TGGTGACCGT GTGGCGCTTG AACCTGGGAT
CAGTTGCTGG CGATGCGGCC ACTGCAAACA GGGTCGATAT AATTTGTGTG ATGAAATGAA GTTTTTTGCT ACTCCACCAG
TTCATGGTTC CCTGGCTAAT CAGATAGTGC ATCCTGCAGA CCTATGTTTT AAGCTTCCAG ACAACGTGAG TCTAGAGGAG
GGGGCCATGT GTGAACCCTT AAGTGTTGGT ATTCATGCTT GTAGGAGAGC TAATATTGGA CCAGAAACCA ATGTGTTGAT
CATGGGAGCT GGACCCATAG GACTTGTTAC ACTGCTTGCA GCTCGTGCTT TCGGAGCACC CAAGACTGTC ATTGTTGATG
TTGATGACTA TCGTTTATCT GTTGCAAAAT CTCTTGGTGC AGATGACATT GTTAAAGTCT CAACAAACAT TCAGGATGTG
GCTGAAGAAG TTGAGCTGAT ACAAAAGGTT ATGGGAGCTT CTATAAATGT TACCTTTGAT TGTGCTGGTT TTGACAAAAC
CATGTCTACA GCATTGGGTG CTACTCAGCC TGGTGGCAAA GTTTGCCTAG TGGGAATGGG ACATTCTGAA ATGACTGTCC
CACTCACCCC TGCAGCAGCA AGGGAAGTTG ATGTGATTGG AGTTTTTCGC TATATGAACA CATGGCCTCT TTGTCTTGAG
TTTCTAAGGA GTGGGAAAAT CGATGTAAAA CCCCTTATAA CTCACAGGTT TGGGTTCTCT CAAAAGGAAG TGGAAGAAGC
TTTTGAAACA AGTGCTCGTG GTGGTACTGC CATCAAGGTC ATGTTCAATC TTTAG

>Vigan.11G193900.01
MGKGGMSIDD NGEDKEQNMA AWLLGINNLK IQPFELPILG PHDVRVRMKA VGICGSDVHY LKTLRCAHFI VKEPMVIGHE
CAGIIEEVGS EVNNLVPGDR VALEPGISCW RCGHCKQGRY NLCDEMKFFA TPPVHGSLAN QIVHPADLCF KLPDNVSLEE
GAMCEPLSVG IHACRRANIG PETNVLIMGA GPIGLVTLLA ARAFGAPKTV IVDVDDYRLS VAKSLGADDI VKVSTNIQDV
AEEVELIQKV MGASINVTFD CAGFDKTMST ALGATQPGGK VCLVGMGHSE MTVPLTPAAA REVDVIGVFR YMNTWPLCLE
FLRSGKIDVK PLITHRFGFS QKEVEEAFET SARGGTAIKV MFNL*