GBrowse Details

Vigan.11G195000.01

Basic Information:
Name: Vigan.11G195000.01
Multiple alignment
Variant Information
Position: Chr11:31952664..31960117 (- strand)
Length: 7454
Functional Information:
Description: Similar to Uncharacterized protein. [K7LE10, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.00,4.30,6.32,0.00,0.11,0.03,0.37
Automatic updates:
Name: NM_001255011 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MADS-box transcription factor 6-like (LOC100779279), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:31952664..31952796 (- strand)
Length: 133
Type: three_prime_UTR
Position: Chr11:31952797..31952896 (- strand)
Length: 100
Type: CDS
Position: Chr11:31953674..31953777 (- strand)
Length: 104
Type: CDS
Position: Chr11:31953890..31953931 (- strand)
Length: 42
Type: CDS
Position: Chr11:31954472..31954513 (- strand)
Length: 42
Type: CDS
Position: Chr11:31954887..31954986 (- strand)
Length: 100
Type: CDS
Position: Chr11:31955319..31955380 (- strand)
Length: 62
Type: CDS
Position: Chr11:31958168..31958249 (- strand)
Length: 82
Type: CDS
Position: Chr11:31959321..31959502 (- strand)
Length: 182
Type: CDS
Position: Chr11:31959503..31960117 (- strand)
Length: 615
Type: five_prime_UTR


>Vigan.11G195000.01
TTGGAAGTGA CGGGTAAAGT GTTCCGCACT TGACCAGAGA GTATTCTTTG TATTCCTTCT AATATATGTC TTATAAAATA
ATTAAGATCT TGACTTTCTC ACTATCTTAA TGCTCATTAA AAATTGTTAC ATCTTATTTT CTTTTTTATT TTATGAATCA
CATCCATTCC TTCTGTTGAA ACAGTTTTGC TCCAATCAAA TAAACTTACT ATAAAGTTTT TGAGGCATTT ATTATAAGAT
TACATGGTTA AGGTGAAAGA GTTTTATGTG ATTGGTTTAA ACAGAGTGAG TGGTTCTCGT TTTCAACTTT TTGTTTACGC
TTTACACGAA TGCATTTGAA CTTGAAAAGC AATAATGGTA ATTAGTAGTA GTTGGTAAAT CACGAAAACT TTAACTTCAC
GATGAGTTCT TGACCTGATA TTGCGGGGAA AAGCGTGGTC ATTAGTTTGG AGATAGAAGT AGAATATGGA ATCTTGATCG
TATTATCTTC GCTGTCCCTT ATGCATGTGC TTATCTATAA CCCCTTCTGC AGTTGAATAT ATAAGTAAAA CAAACTGCAA
TTTACAACCA TATACTTAAT ATTTTACTGT GAGAGAGAGA GAGAAAAAAA AAAGCATGGG AAGAGGAAGG GTTGTTCTTG
AGAGAATAGA GAACAAGATC AACCGTCAAG TAACGTTCTC AAAGCGCAGA AGTGGGTTGC TGAAGAAGGC CTTTGAGCTT
TCTGTGCTCT GTGATGCAGA AGTTGCCCTT ATCGTCTTTT CTAGCCGTGG GAAGCTTTTT CAGTATAGCA GCACTGATAT
TAATAAAATC GTTGAGAGGT ATCGCCAATG TCGTTACAGC AAGTTACAGA CGGGTGATTC ATCGGAACTC GAATCACAGA
GTTCATATCA TGAATTCTTG AAATTAAGAG CGAAATACGA ATCTCTTGAG CGGACACAAA GGCATTTTCA AGGAGAAGAA
CTTGAGCCTC TTAGCTTTAA AGAATTGCAG AGCCTTGAGA AACAACTAGA TATTACACTT GCTCTAACTC GACAGCAGCA
AACAAAGAAG CTCATGGCAC GAGCTGATGA ATTACGCGAA AAGGTGCGCA AAATGGAAGA TCTTAACAAA CAATTGGAAT
CTAAGGAAAA AGATGAATTC TCAAACCTCA TTCTTGAGAG TAACAATTTT TTTCAACTGC ATGCTACACA AGCCGATCAA
TTTGAATCTG GAACAACACT AAACACATGT AGGTTTCAAC AGCAAGAAGT TGGTTCGAAA GAAAGAGCAA TTGATACAAG
GACAGAGGGT AACCATAGCA CTCACACCAA AAGCAATGGA TGGTTGTAGT GAATGTTAAT GTATTTTACA TAAATGTTCC
AAAAACACTT ATTTAGGGTA TACCTTGCAT TGGTATTCAC ACAATAATTT TTATAAAGTA AATGTTATTT CAACTCAACA
CTCTCTCGTT AAGGGATTAT GC

>Vigan.11G195000.01
ATGGGAAGAG GAAGGGTTGT TCTTGAGAGA ATAGAGAACA AGATCAACCG TCAAGTAACG TTCTCAAAGC GCAGAAGTGG
GTTGCTGAAG AAGGCCTTTG AGCTTTCTGT GCTCTGTGAT GCAGAAGTTG CCCTTATCGT CTTTTCTAGC CGTGGGAAGC
TTTTTCAGTA TAGCAGCACT GATATTAATA AAATCGTTGA GAGGTATCGC CAATGTCGTT ACAGCAAGTT ACAGACGGGT
GATTCATCGG AACTCGAATC ACAGAGTTCA TATCATGAAT TCTTGAAATT AAGAGCGAAA TACGAATCTC TTGAGCGGAC
ACAAAGGCAT TTTCAAGGAG AAGAACTTGA GCCTCTTAGC TTTAAAGAAT TGCAGAGCCT TGAGAAACAA CTAGATATTA
CACTTGCTCT AACTCGACAG CAGCAAACAA AGAAGCTCAT GGCACGAGCT GATGAATTAC GCGAAAAGGT GCGCAAAATG
GAAGATCTTA ACAAACAATT GGAATCTAAG GAAAAAGATG AATTCTCAAA CCTCATTCTT GAGAGTAACA ATTTTTTTCA
ACTGCATGCT ACACAAGCCG ATCAATTTGA ATCTGGAACA ACACTAAACA CATGTAGGTT TCAACAGCAA GAAGTTGGTT
CGAAAGAAAG AGCAATTGAT ACAAGGACAG AGGGTAACCA TAGCACTCAC ACCAAAAGCA ATGGATGGTT GTAG

>Vigan.11G195000.01
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSS RGKLFQYSST DINKIVERYR QCRYSKLQTG
DSSELESQSS YHEFLKLRAK YESLERTQRH FQGEELEPLS FKELQSLEKQ LDITLALTRQ QQTKKLMARA DELREKVRKM
EDLNKQLESK EKDEFSNLIL ESNNFFQLHA TQADQFESGT TLNTCRFQQQ EVGSKERAID TRTEGNHSTH TKSNGWL*