VIGGS:GBrowse

Vigan.11G195200.01

Basic Information:

Name:	Vigan.11G195200.01 Multiple alignment Variant Information
Position:	Chr11:32006337..32008405 (+ strand)
Length:	2069

Functional Information:

Description:	Similar to Uncharacterized protein. [I1L3G4, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro:	Isopenicillin N synthase (IPR002283)
	Oxoglutarate/iron-dependent dioxygenase (IPR005123)
	Non-haem dioxygenase N-terminal domain (IPR026992)
	Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:3.29,5.57,0.89,4.17,4.42,2.09,32.17,2.46
Arabidopsis thaliana homolog:	AT4G25420.1, AT5G51810.1

Automatic updates:

Name:	NM_001371636 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max gibberellin 20-oxidase (GA20OX3), mRNA.
PubMed ID:	31852439 NCBI(pubmed)
	29550969 NCBI(pubmed)
	30060711 NCBI(pubmed)
	23762343 NCBI(pubmed)
	21056641 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:32006337..32006520 (+ strand)
Length:	184
Type:	five_prime_UTR

Position:	Chr11:32006521..32007089 (+ strand)
Length:	569
Type:	CDS

Position:	Chr11:32007200..32007521 (+ strand)
Length:	322
Type:	CDS

Position:	Chr11:32007633..32007896 (+ strand)
Length:	264
Type:	CDS

Position:	Chr11:32007897..32008405 (+ strand)
Length:	509
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G195200.01
GCCTATATAA TGCTGAATCC CTCTCTGTTT TCTCCAATAA GGGGCCTTGG CTTTTCCTTC ATCCTCTCTC TTGAACTTAT
TCATTTCTCT CTCACTCTCT GTTTTTCCTC TGTTTCTCTC AAACCATACC TTTTATTATT CCCATTATTT TAGTATTAGA
AACTAGTTTT GCATTGTTAA TACAATGGCT ATAGACTGCA TAACAAATAT ACAAACCATG TCTCAGCCAC AAAAGCAGCA
GCAGCAGCAG CAAGACCACA AAGAAGATGA AACTCCATTG GTTTTTGATG CCTCACTTCT AAGGCACCAA CTGGACCTAC
CAAAGCAATT CATTTGGCCT GATGAGGAGA AGCCATGCAT GAATGTGCCT GAGCTTGCTG TCCCTCTCAT TGACCTGAGG
GGATTCCTCT CTGGTGACCC TGTTGCCACA ATGGAAGCTG CAAGAATGGT TGGTGAAGCA TGCCAAAAGC ATGGTTTCTT
TCTGGTAGTC AACCATGGGA TTGATGCCAA CTTAATCTCT CATGCTCACA GCTACATGGA TGACTTCTTT GAGGTTCCCC
TGCCTCAGAA ACAGAGAGCT CAGAGGAAAA CAGGGGAACA CTGTGGCTAT GCCAGTAGCT TCACTGGCAG ATTCTCTTCC
AAGCTTCCAT GGAAAGAGAC ACTCTCTTTT CAGTACTCAG CTGAGGAGAA ATCATCCACT ATTGTCAAAG ACTACTTGTG
CAACACATTG GGCCAGGAGT TTGAGCAATT TGGGAGGGTT TACCAGGACT ATTGTGATGG CATGAGTAAT CTTTCTTTGG
GGATAATGGA ACTTTTGGGA ATGAGTCTTG GAGTTGGAAA AGCATATTTC AGACAGTTCT TTGAAGAGAA CAATTCAATA
ATGAGGCTGA ATTACTACCC TCCTTGTCAA AAACCTGACC TGACTTTGGG CACAGGACCT CACTGTGACC CAACATCTTT
GACCATTCTT CACCAGGACC AAGTGGGAGG CCTCCAAGTT TTTGTTGACA ATGAGTGGCA TTCCATTAGC CCAAATTTCA
ATGCTTTTGT TGTCAACATA GGTGACACCT TCATGGCTCT CTCCAATGGG AGGTACAAGA GTTGCTTGCA TAGGGCAGTG
GTGAACAGCA AGACAACAAG AAAATCTCTT GCTTTCTTTT TGTGTCCAAA AAGTGATAAG GTGGTGAGTC CACCAAGTGA
ATTGGTGGAT GACTTGACCC CAAGGATGTA CCCAGATTTT ACATGGCCTA TGCTGCTAGA GTTTACTCAG AAACACTACA
GAGCTGACAT GAAAACCCTT GAGGCATTCA CCAACTGGCT TCAACACAAA AGGACCTGAA ATCTCAAGCA CATCAATGCC
TTATTATTTA TTAGCCTTTG ATATTCCCAT ATGAAAAATC AATAGTGACA TGTGCCAAGT GGAACTGTAT TTGATGGCGG
AAAGCACTTC AAGGAAAAGG GCAGCAGCAA AAAGGCACTG AGAATGAAAA ATCAGAAGAA AATTCATCTT TTCTTCATGT
TTTGAGTGTT GCACACCTGT GATAAGTGAT TAGTAGTAAT GAACAAAACG AGGGATATAT AATATTTATA AGGAATCCAT
AAGAAACAAT TCGCCAGCTA ATTTTGTAAT TTTTCTTTGG TGATATAGAA AAGCTTTATT ATTAAACTTC CAACGTTTCT
TTTCTCTTCA AGTGCATCAC CATTCACCAC CACATATGAT ATGATAACAA ACCCAAATAA ACTTTCTTTA TGGCATTATC
AGAAAGACTT GATATTCTGT CAAATCCCAG TAACTCTCCA TGCAGAGATG CTACACTCAC TTTTTCTTCA TTCCTTCATC
AATCTTGT

[show][hide][copy]CDS

>Vigan.11G195200.01
ATGGCTATAG ACTGCATAAC AAATATACAA ACCATGTCTC AGCCACAAAA GCAGCAGCAG CAGCAGCAAG ACCACAAAGA
AGATGAAACT CCATTGGTTT TTGATGCCTC ACTTCTAAGG CACCAACTGG ACCTACCAAA GCAATTCATT TGGCCTGATG
AGGAGAAGCC ATGCATGAAT GTGCCTGAGC TTGCTGTCCC TCTCATTGAC CTGAGGGGAT TCCTCTCTGG TGACCCTGTT
GCCACAATGG AAGCTGCAAG AATGGTTGGT GAAGCATGCC AAAAGCATGG TTTCTTTCTG GTAGTCAACC ATGGGATTGA
TGCCAACTTA ATCTCTCATG CTCACAGCTA CATGGATGAC TTCTTTGAGG TTCCCCTGCC TCAGAAACAG AGAGCTCAGA
GGAAAACAGG GGAACACTGT GGCTATGCCA GTAGCTTCAC TGGCAGATTC TCTTCCAAGC TTCCATGGAA AGAGACACTC
TCTTTTCAGT ACTCAGCTGA GGAGAAATCA TCCACTATTG TCAAAGACTA CTTGTGCAAC ACATTGGGCC AGGAGTTTGA
GCAATTTGGG AGGGTTTACC AGGACTATTG TGATGGCATG AGTAATCTTT CTTTGGGGAT AATGGAACTT TTGGGAATGA
GTCTTGGAGT TGGAAAAGCA TATTTCAGAC AGTTCTTTGA AGAGAACAAT TCAATAATGA GGCTGAATTA CTACCCTCCT
TGTCAAAAAC CTGACCTGAC TTTGGGCACA GGACCTCACT GTGACCCAAC ATCTTTGACC ATTCTTCACC AGGACCAAGT
GGGAGGCCTC CAAGTTTTTG TTGACAATGA GTGGCATTCC ATTAGCCCAA ATTTCAATGC TTTTGTTGTC AACATAGGTG
ACACCTTCAT GGCTCTCTCC AATGGGAGGT ACAAGAGTTG CTTGCATAGG GCAGTGGTGA ACAGCAAGAC AACAAGAAAA
TCTCTTGCTT TCTTTTTGTG TCCAAAAAGT GATAAGGTGG TGAGTCCACC AAGTGAATTG GTGGATGACT TGACCCCAAG
GATGTACCCA GATTTTACAT GGCCTATGCT GCTAGAGTTT ACTCAGAAAC ACTACAGAGC TGACATGAAA ACCCTTGAGG
CATTCACCAA CTGGCTTCAA CACAAAAGGA CCTGA

[show][hide][copy]PROTEIN

>Vigan.11G195200.01
MAIDCITNIQ TMSQPQKQQQ QQQDHKEDET PLVFDASLLR HQLDLPKQFI WPDEEKPCMN VPELAVPLID LRGFLSGDPV
ATMEAARMVG EACQKHGFFL VVNHGIDANL ISHAHSYMDD FFEVPLPQKQ RAQRKTGEHC GYASSFTGRF SSKLPWKETL
SFQYSAEEKS STIVKDYLCN TLGQEFEQFG RVYQDYCDGM SNLSLGIMEL LGMSLGVGKA YFRQFFEENN SIMRLNYYPP
CQKPDLTLGT GPHCDPTSLT ILHQDQVGGL QVFVDNEWHS ISPNFNAFVV NIGDTFMALS NGRYKSCLHR AVVNSKTTRK
SLAFFLCPKS DKVVSPPSEL VDDLTPRMYP DFTWPMLLEF TQKHYRADMK TLEAFTNWLQ HKRT*