GBrowse Details

Vigan.11G199700.01

Basic Information:
Name: Vigan.11G199700.01
Multiple alignment
Variant Information
Position: Chr11:32510708..32515644 (+ strand)
Length: 4937
Functional Information:
Description: Similar to uncharacterized protein. [D7L8U4, Arabidopsis lyrata subsp. lyrata]
InterPro: Domain of unknown function DUF89 (IPR002791)
Uncharacterised conserved protein UCP030210 (IPR016949)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.10,19.91,28.26,28.96,14.73,11.72,14.50,26.32
Arabidopsis thaliana homolog: AT2G17320.1, AT2G17340.1, AT4G35360.1
Automatic updates:
Name: NM_001255359 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100804454 (LOC100804454), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:32510708..32510919 (+ strand)
Length: 212
Type: five_prime_UTR
Position: Chr11:32510920..32511089 (+ strand)
Length: 170
Type: CDS
Position: Chr11:32512214..32512279 (+ strand)
Length: 66
Type: CDS
Position: Chr11:32512364..32512430 (+ strand)
Length: 67
Type: CDS
Position: Chr11:32512565..32512633 (+ strand)
Length: 69
Type: CDS
Position: Chr11:32512959..32513099 (+ strand)
Length: 141
Type: CDS
Position: Chr11:32513679..32513807 (+ strand)
Length: 129
Type: CDS
Position: Chr11:32513924..32514010 (+ strand)
Length: 87
Type: CDS
Position: Chr11:32514551..32514625 (+ strand)
Length: 75
Type: CDS
Position: Chr11:32514709..32514786 (+ strand)
Length: 78
Type: CDS
Position: Chr11:32514903..32514980 (+ strand)
Length: 78
Type: CDS
Position: Chr11:32515089..32515151 (+ strand)
Length: 63
Type: CDS
Position: Chr11:32515242..32515322 (+ strand)
Length: 81
Type: CDS
Position: Chr11:32515323..32515644 (+ strand)
Length: 322
Type: three_prime_UTR


>Vigan.11G199700.01
CAGAAAAGGA AAAGAAGTTG AGAGTTTCAA CTCGTGTTGT GGGAAGTGAA AGTGAGGAGA GAAGCGCCAC TCCGTCACGC
TTTCTCTCTC ATCTCTCTCT CTCTGTCTCT CTCACTGCAA TTCCTGTTGC CGAATTGAAC TCACAACGCA ACTCGGATCT
TATCACTATT TATTGATTTT GCAATCACAT TCATTCCTTC TTGCTGTGAA AAATGGAAAG CGCGTCAGAG CTTGTGGAAT
TTCCATTGTT GTTGACACCA ATCGATTCCC ACTACAGAGC ATGCACCATT CCCTACAGAT TCCCCTCCGA TAACCCCCGC
AAGCCCACTC CCACCGAAAT CTCTTGGATT GATCTCTTCC TCAACTCCAT CCCCTCTTTC AAGAGGCGTG CAGAGAGTGA
TGCTTCTGTT CCTGACGCGG CTGCCAAAGC TGAAAAATTT GCTCAAAGAT ATGCTGACAT ACTTGAAGAT TTGAAGAAAG
ATCCTGAAAG TCATGGTGGG CCTCCTGATT GCATTCTTCT TTGCCGACTT CGTGAGCAAG TGCTCCGAGA ATTAGGATTC
AGAGATATAT TCAAAAAAGT CAAGGATGAA GAAAATGCAA AAGCCATCTC ACTTTTTGAG AATGTTGTTC AACTTAATGA
TGCCATTGAA GATGAAGGCA AGCGACTTGA GAATCTAGTC AGAGGAATTT TTGCTGGAAA CATATTTGAT CTTGGTTCTG
CACAGCTTGC AGAGGTTTTC TCTAAGGATG GAATGTCCTT TTTGGCTAGT TGCCAAAATC TGGTTCCTCG ACCATGGGTT
ATTGATGATC TTGACACGTT TAAAATGAAA TGGAGCAGGA AGCCATGGAA GAAGGTTGTC ATATTTGTCG ATAACTCTGG
TGCAGATATC ATTTTAGGTA TCATGCCATT TGCAAGAGAG CTACTTCGGC GTGGGAGTCA GGTTGTATTG GCTGCTAATG
AGTTACCATC TATCAATGAT GTCACTTGTT CTGAGCTAGT TGAAATTATA TCAAAGTTGA AGGATGAACA AGAACAACTT
GTGGGTGTCA GTACTTCAAA TCTTTTAATT GCTAACTCTG GCAACGATTT ACCTGTTATT GATCTTACAA GAGTGTCACA
GGAGCTTGCT TACCTTGCCA GTGATGCAGA TCTTGTCATA TTAGAAGGGA TGGGACGTGG AATAGAAACA AATCTGTATG
CTCAGTTCAA ATGTGATTCC CTGAAGATTG GAATGGTAAA ACATCCTGAG GTTGCACAAT TTCTTGGTGG ACGTTTATAT
GACTGCGTGT TCAAATACAA TGAAGTTTCA TCTTAACAAG CCTTATTCTT TTCTCTACTA ATGCTGCACA ACCTGCATAT
TTTCTACTGT TAATCCTTCA TCTTGGTGCA ACCATTGATA TGCCTTTAGT TTCGTACTTT TCAGAACGTC AATTCAGTGT
TATAAAGGTG ATATGACCGA ACCATTTTAC TTGTAATAAA AAACGATTCT ACATACATGC AGTTAGAAAA ATGTTAACAG
CATACTATTT CTTATCAGTT GAAATTCTTG TTTAAGTAAC AAAGTCAGAT TTGTTTCTTG TAACCAAGAT CCTGAATTTT
AACTACAGCA CAAGTGTATC ATTTCTTTCT AAGGAAAA

>Vigan.11G199700.01
ATGGAAAGCG CGTCAGAGCT TGTGGAATTT CCATTGTTGT TGACACCAAT CGATTCCCAC TACAGAGCAT GCACCATTCC
CTACAGATTC CCCTCCGATA ACCCCCGCAA GCCCACTCCC ACCGAAATCT CTTGGATTGA TCTCTTCCTC AACTCCATCC
CCTCTTTCAA GAGGCGTGCA GAGAGTGATG CTTCTGTTCC TGACGCGGCT GCCAAAGCTG AAAAATTTGC TCAAAGATAT
GCTGACATAC TTGAAGATTT GAAGAAAGAT CCTGAAAGTC ATGGTGGGCC TCCTGATTGC ATTCTTCTTT GCCGACTTCG
TGAGCAAGTG CTCCGAGAAT TAGGATTCAG AGATATATTC AAAAAAGTCA AGGATGAAGA AAATGCAAAA GCCATCTCAC
TTTTTGAGAA TGTTGTTCAA CTTAATGATG CCATTGAAGA TGAAGGCAAG CGACTTGAGA ATCTAGTCAG AGGAATTTTT
GCTGGAAACA TATTTGATCT TGGTTCTGCA CAGCTTGCAG AGGTTTTCTC TAAGGATGGA ATGTCCTTTT TGGCTAGTTG
CCAAAATCTG GTTCCTCGAC CATGGGTTAT TGATGATCTT GACACGTTTA AAATGAAATG GAGCAGGAAG CCATGGAAGA
AGGTTGTCAT ATTTGTCGAT AACTCTGGTG CAGATATCAT TTTAGGTATC ATGCCATTTG CAAGAGAGCT ACTTCGGCGT
GGGAGTCAGG TTGTATTGGC TGCTAATGAG TTACCATCTA TCAATGATGT CACTTGTTCT GAGCTAGTTG AAATTATATC
AAAGTTGAAG GATGAACAAG AACAACTTGT GGGTGTCAGT ACTTCAAATC TTTTAATTGC TAACTCTGGC AACGATTTAC
CTGTTATTGA TCTTACAAGA GTGTCACAGG AGCTTGCTTA CCTTGCCAGT GATGCAGATC TTGTCATATT AGAAGGGATG
GGACGTGGAA TAGAAACAAA TCTGTATGCT CAGTTCAAAT GTGATTCCCT GAAGATTGGA ATGGTAAAAC ATCCTGAGGT
TGCACAATTT CTTGGTGGAC GTTTATATGA CTGCGTGTTC AAATACAATG AAGTTTCATC TTAA

>Vigan.11G199700.01
MESASELVEF PLLLTPIDSH YRACTIPYRF PSDNPRKPTP TEISWIDLFL NSIPSFKRRA ESDASVPDAA AKAEKFAQRY
ADILEDLKKD PESHGGPPDC ILLCRLREQV LRELGFRDIF KKVKDEENAK AISLFENVVQ LNDAIEDEGK RLENLVRGIF
AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VPRPWVIDDL DTFKMKWSRK PWKKVVIFVD NSGADIILGI MPFARELLRR
GSQVVLAANE LPSINDVTCS ELVEIISKLK DEQEQLVGVS TSNLLIANSG NDLPVIDLTR VSQELAYLAS DADLVILEGM
GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVF KYNEVSS*