GBrowse Details

Vigan.11G200200.01

Basic Information:
Name: Vigan.11G200200.01
Multiple alignment
Variant Information
Position: Chr11:32551839..32555309 (- strand)
Length: 3471
Functional Information:
Description: Similar to Uncharacterized protein. [I1L3L1, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Band 7 protein (IPR001107)
Stomatin family (IPR001972)
Hypersensitive-induced response protein (IPR028512)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:151.91,49.17,24.47,39.15,35.30,61.34,44.98,26.57
Arabidopsis thaliana homolog: AT5G51570.1
Automatic updates:
Name: NM_001254549 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hypersensitive-induced response protein 4-like (HIR4), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:32551839..32552163 (- strand)
Length: 325
Type: three_prime_UTR
Position: Chr11:32552164..32552537 (- strand)
Length: 374
Type: CDS
Position: Chr11:32552733..32552829 (- strand)
Length: 97
Type: CDS
Position: Chr11:32554464..32554555 (- strand)
Length: 92
Type: CDS
Position: Chr11:32554655..32554775 (- strand)
Length: 121
Type: CDS
Position: Chr11:32554975..32555169 (- strand)
Length: 195
Type: CDS
Position: Chr11:32555170..32555309 (- strand)
Length: 140
Type: five_prime_UTR


>Vigan.11G200200.01
CCAATTAACA TTTTTGTATT ACACGTTTAC TTTTCTTCTG AATATGGAAG TATATAACAT GTTTACTTCG AAGAAGATAT
TTTCGTTAAG GCAGTGTTGA TTTGTTGTTG TTCAGTGCTT TTGATTCTAC AGTAGCAAGG ATGGGAAACA CGTTCTGTTT
CTTCTGTGGA TGCGTTGCTC AATCGAGCGT CGGCGTCGTC GAACAGTGGG GTCGCTTCCA CCGCCTCGCG CAACCCGGTT
GCCACTTTTT CAACCCTCTC GCCGGCGAAT GCCTCGCCGG AATCCTCTCC ACCAGAATCT CCTCCCTCGA CGTCCGCATC
GAGACCAAAA CCAAGGACAA TGTGTTTGTG CAGTTGCTGT GTTCAATTCA GTACCGAGTG ATTAAGGAAA ACGCGGATGA
TGCTTTCTAT GAATTGCAGA ATCCTCAGGA GCAGATCCAG GCTTATGTTT TCGATGTGAC ACGTGCTATT GTTCCGAGAA
TGAACTTGGA TGAGCTCTTT GAGCAGAAGG GCGAGGTTGC TAGAGCTGTC TTGGAGGAAC TTGAAAAGGT GATGGGAGAG
TATGGGTATA ATATAGAGCA CATTCTCATG GTTGATATTA TACCCGATCC TTCTGTGCGT AAGGCAATGA ATGAGATCAA
TGCAGCTCAA AGGATGCAAC TTGCAAGTGA GTACAAAGGA GAAGCTGAAA AGATATTGCT AGTTAAAAAG GCAGAAGCTG
AAGCTGAGGC CAAGTATTTG GGTGGGGTTG GTGTGGCTAG GCAACGGCAA GCTATTACAG ATGGCTTGAG AGAGAACATC
CTGAATTTCT CTCACAAAGT AGAAGGCACT AATGCTAAGG AGGTGATGGA TCTTATCATG ATAACTCAGT ACTTTGACAC
AATCAAAGAC CTTGGGAATT CATCAAAGAA TACCACTGTT TTTATACCCC ACGGACCTGG CCATGTTAGG GATATTGGAG
AGCAGATACG CAACGGACTG ATGGAAGCAG CCAGTGCTCA AGTAAATGTG GAGGAGTGAT TTTGTAATAT TGCCTTCGAA
GGTATAGCCC TTTACAGTCA CACACATAGT CCAATTATAC TGGTATTACT CGTGTAATTA ATAAGTGTCT GTTTAGTTTT
GTGGAATAAA AGTTTTTGGT CAGCTGGATG TAAAATCAGA TGTTTTTCAG TCGTATTATG TAAAGTTTGC TGTCATGCTA
TATTTTAGAA ATTCGAAAGG TAATATAGAA CCGAATTCAT ATGAATTAAA TGAAATAGTT TGTGGCTTTC CTTTTTATGG
AGTGTATAGG GTAAATTACC TTTTTGAAAT ATGACCTATT GTAATTTTTA TATATGAACA TATT

>Vigan.11G200200.01
ATGGGAAACA CGTTCTGTTT CTTCTGTGGA TGCGTTGCTC AATCGAGCGT CGGCGTCGTC GAACAGTGGG GTCGCTTCCA
CCGCCTCGCG CAACCCGGTT GCCACTTTTT CAACCCTCTC GCCGGCGAAT GCCTCGCCGG AATCCTCTCC ACCAGAATCT
CCTCCCTCGA CGTCCGCATC GAGACCAAAA CCAAGGACAA TGTGTTTGTG CAGTTGCTGT GTTCAATTCA GTACCGAGTG
ATTAAGGAAA ACGCGGATGA TGCTTTCTAT GAATTGCAGA ATCCTCAGGA GCAGATCCAG GCTTATGTTT TCGATGTGAC
ACGTGCTATT GTTCCGAGAA TGAACTTGGA TGAGCTCTTT GAGCAGAAGG GCGAGGTTGC TAGAGCTGTC TTGGAGGAAC
TTGAAAAGGT GATGGGAGAG TATGGGTATA ATATAGAGCA CATTCTCATG GTTGATATTA TACCCGATCC TTCTGTGCGT
AAGGCAATGA ATGAGATCAA TGCAGCTCAA AGGATGCAAC TTGCAAGTGA GTACAAAGGA GAAGCTGAAA AGATATTGCT
AGTTAAAAAG GCAGAAGCTG AAGCTGAGGC CAAGTATTTG GGTGGGGTTG GTGTGGCTAG GCAACGGCAA GCTATTACAG
ATGGCTTGAG AGAGAACATC CTGAATTTCT CTCACAAAGT AGAAGGCACT AATGCTAAGG AGGTGATGGA TCTTATCATG
ATAACTCAGT ACTTTGACAC AATCAAAGAC CTTGGGAATT CATCAAAGAA TACCACTGTT TTTATACCCC ACGGACCTGG
CCATGTTAGG GATATTGGAG AGCAGATACG CAACGGACTG ATGGAAGCAG CCAGTGCTCA AGTAAATGTG GAGGAGTGA

>Vigan.11G200200.01
MGNTFCFFCG CVAQSSVGVV EQWGRFHRLA QPGCHFFNPL AGECLAGILS TRISSLDVRI ETKTKDNVFV QLLCSIQYRV
IKENADDAFY ELQNPQEQIQ AYVFDVTRAI VPRMNLDELF EQKGEVARAV LEELEKVMGE YGYNIEHILM VDIIPDPSVR
KAMNEINAAQ RMQLASEYKG EAEKILLVKK AEAEAEAKYL GGVGVARQRQ AITDGLRENI LNFSHKVEGT NAKEVMDLIM
ITQYFDTIKD LGNSSKNTTV FIPHGPGHVR DIGEQIRNGL MEAASAQVNV EE*