GBrowse Details

Vigan.11G200500.01

Basic Information:
Name: Vigan.11G200500.01
Multiple alignment
Variant Information
Position: Chr11:32619240..32622251 (- strand)
Length: 3012
Functional Information:
Description: Similar to Uncharacterized protein. [I1LC20, Glycine max]
GO: Biological Process: photosynthesis, light harvesting (GO:0009765)
Cellular Component: membrane (GO:0016020)
InterPro: Chlorophyll A-B binding protein, plant (IPR001344)
Chlorophyll A-B binding protein (IPR022796)
Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.74,0.75,495.26,3531.49,5.36,594.73,9.51,397.48
Arabidopsis thaliana homolog: AT4G10340.1
Automatic updates:
Name: NM_001360371 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chlorophyll a-b binding protein CP26 (LOC100806585), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:32619240..32619597 (- strand)
Length: 358
Type: three_prime_UTR
Position: Chr11:32619598..32619858 (- strand)
Length: 261
Type: CDS
Position: Chr11:32620357..32620491 (- strand)
Length: 135
Type: CDS
Position: Chr11:32621029..32621149 (- strand)
Length: 121
Type: CDS
Position: Chr11:32621246..32621296 (- strand)
Length: 51
Type: CDS
Position: Chr11:32621390..32621474 (- strand)
Length: 85
Type: CDS
Position: Chr11:32621664..32621886 (- strand)
Length: 223
Type: CDS
Position: Chr11:32621887..32622251 (- strand)
Length: 365
Type: five_prime_UTR


>Vigan.11G200500.01
TATAAAAATG TCACCTTTAG AAAAAAAAAA AACTAAAAAC CTTGCTTGTG TGGGTTAGGA AATGCAAATG GTTGATGGAA
AAAGGTCCAA GAGGTTTCAG GATAAAACAT GTTATCCAGA ACCAAGCAAT CTTCCAGCTC AGGAGATATC ATCATCCTTC
ACACATCAGT CTTAACCAAT CAAATCCTTG CATTGGATTG CAATTCTCTC ATCTACACCA ATCAAACTCC ATGTTGATGA
ATCTGACATG GCACGTTTAC ATCCACCAGT CCATGCATAT AGTATCTGCA TCAGCATTCG CTTAACCCTT CATCCTTTAC
CTCTGTTTGT GACACATTCA TCTGAGTTTT TGAGGCTTCC AAAGCATGGC TTCCCTTGCA GCTTCCACCG CTGCTGCATC
CCTTGGCATG TCAGAAATGC TTGGAAACCC CATCAACCTC AGTGGTGCCA CAAGGCCTGC TCCATCTCCC TCTAGCCCTG
CCTCCTTCAA GACTGTGGCT CTTTTCTCCA AAAAGAAGGC AGCATCAACT CCCCCCAAAA AAGCTGCTGC TGTTTCTCCT
GCCAATGATG AACTTGCCAA GTGGTATGGT CCTGATAGAA GGATCTTCTT GCCAGAGGGT CTCTTGGACC GATCTGAGAT
CCCAGAGTAC TTGACTGGAG AAGTCCCCGG AGATTATGGT TATGACCCTT TTGGTCTCAG CAAGAAGCCA GAGGACTTTG
CCAAATATCA GGCATTTGAG TTGATTCACG CCAGATGGGC AATGCTTGGT GCTGCTGGAT TCATCATTCC TGAGGCCTTC
AACAAATATG GAGCTAACTG TGGTCCTGAG GCTGTTTGGT TCAAGACAGG AGCTCTGCTT CTTGATGGGG GTACGTTGAA
CTACTTTGGG AAACCCATTC CCATCAATCT TATTGTGGCT GTCATTGCTG AGATAGTTCT TGTGGGAGGT GCAGAGTACT
ACAGAATTAC TAATGGCCTG AATTTCGAAG ACAAACTTCA TCCAGGTGGT CCATTTGACC CATTGGGACT TGCAAATGAT
CCAGATCAGG CTGCACTGCT AAAGGTGAAG GAAATCAAGA ATGGTAGACT TGCTATGTTT GCCATGCTTG GTTTCTACTT
CCAAGCCTAT GTGACTGGAG AAGGCCCTGT TGAGAACCTT GCAAAGCATC TCAGCGACCC TTTTGGCAAC AACTTGCTCA
CAGTCATTGC TGGAAATGCT GAAAGAGCTC CAACTCTCTA AACCATTCAT CTTCATGTTT TTCTCCAATC TTAATGTACA
ATACATATCA CTGAGATAAT TTAAGGCATA TCTTGCTTTG TTCCTTGCAA CTCAACTCAC AAAACTTAAT TTCTTCCACT
TCTTCTCTGT CTAATTAAGT AAAATCATTC CACAAAACAC TACACAAGCA AATTCTTAAT TGAAAAAACT TATAATTCTT
AGTGCTTGAG CTATTTCAAA TGGGGATGGC CAATGAGGTT TTCTGCTGTA GATCAATCAT GTATGTCTAA GTTAGTTCTT
ATACAGACAT CATTTGACAA AAACAAAAAA TATATAAGGA ACTTGTACAG TAAAAGTCAT TAACTTCACG ATAAGTTAA

>Vigan.11G200500.01
ATGGCTTCCC TTGCAGCTTC CACCGCTGCT GCATCCCTTG GCATGTCAGA AATGCTTGGA AACCCCATCA ACCTCAGTGG
TGCCACAAGG CCTGCTCCAT CTCCCTCTAG CCCTGCCTCC TTCAAGACTG TGGCTCTTTT CTCCAAAAAG AAGGCAGCAT
CAACTCCCCC CAAAAAAGCT GCTGCTGTTT CTCCTGCCAA TGATGAACTT GCCAAGTGGT ATGGTCCTGA TAGAAGGATC
TTCTTGCCAG AGGGTCTCTT GGACCGATCT GAGATCCCAG AGTACTTGAC TGGAGAAGTC CCCGGAGATT ATGGTTATGA
CCCTTTTGGT CTCAGCAAGA AGCCAGAGGA CTTTGCCAAA TATCAGGCAT TTGAGTTGAT TCACGCCAGA TGGGCAATGC
TTGGTGCTGC TGGATTCATC ATTCCTGAGG CCTTCAACAA ATATGGAGCT AACTGTGGTC CTGAGGCTGT TTGGTTCAAG
ACAGGAGCTC TGCTTCTTGA TGGGGGTACG TTGAACTACT TTGGGAAACC CATTCCCATC AATCTTATTG TGGCTGTCAT
TGCTGAGATA GTTCTTGTGG GAGGTGCAGA GTACTACAGA ATTACTAATG GCCTGAATTT CGAAGACAAA CTTCATCCAG
GTGGTCCATT TGACCCATTG GGACTTGCAA ATGATCCAGA TCAGGCTGCA CTGCTAAAGG TGAAGGAAAT CAAGAATGGT
AGACTTGCTA TGTTTGCCAT GCTTGGTTTC TACTTCCAAG CCTATGTGAC TGGAGAAGGC CCTGTTGAGA ACCTTGCAAA
GCATCTCAGC GACCCTTTTG GCAACAACTT GCTCACAGTC ATTGCTGGAA ATGCTGAAAG AGCTCCAACT CTCTAA

>Vigan.11G200500.01
MASLAASTAA ASLGMSEMLG NPINLSGATR PAPSPSSPAS FKTVALFSKK KAASTPPKKA AAVSPANDEL AKWYGPDRRI
FLPEGLLDRS EIPEYLTGEV PGDYGYDPFG LSKKPEDFAK YQAFELIHAR WAMLGAAGFI IPEAFNKYGA NCGPEAVWFK
TGALLLDGGT LNYFGKPIPI NLIVAVIAEI VLVGGAEYYR ITNGLNFEDK LHPGGPFDPL GLANDPDQAA LLKVKEIKNG
RLAMFAMLGF YFQAYVTGEG PVENLAKHLS DPFGNNLLTV IAGNAERAPT L*