VIGGS:GBrowse

Vigan.11G203400.01

Basic Information:

Name:	Vigan.11G203400.01 Multiple alignment Variant Information
Position:	Chr11:32848679..32858078 (+ strand)
Length:	9400

Functional Information:

Description:	Similar to Uncharacterized protein. [C6T0X3, Glycine max]
GO:	Biological Process: transport (GO:0006810)
	Biological Process: vesicle-mediated transport (GO:0016192)
	Cellular Component: integral to membrane (GO:0016021)
InterPro:	Vesicle transport protein, Got1/SFT2-like (IPR007305)
InterPro:	Vesicle transport protein, SFT2-like (IPR011691)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:16.53,6.94,7.76,8.49,11.57,23.70,9.74,12.89
Arabidopsis thaliana homolog:	AT5G23550.1

Automatic updates:

Name:	BT091078 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-6L23 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001415733 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max vesicle transport protein SFT2B (LOC100809781), transcript variant 1, mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:32848679..32848869 (+ strand)
Length:	191
Type:	five_prime_UTR

Position:	Chr11:32848870..32849022 (+ strand)
Length:	153
Type:	CDS

Position:	Chr11:32851354..32851407 (+ strand)
Length:	54
Type:	CDS

Position:	Chr11:32851957..32852030 (+ strand)
Length:	74
Type:	CDS

Position:	Chr11:32856159..32856276 (+ strand)
Length:	118
Type:	CDS

Position:	Chr11:32856377..32856435 (+ strand)
Length:	59
Type:	CDS

Position:	Chr11:32857601..32857679 (+ strand)
Length:	79
Type:	CDS

Position:	Chr11:32857680..32858078 (+ strand)
Length:	399
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G203400.01
GAAAGCTGCT ACATGAGCTT GGTTTCAGTG AAGTGGAGTC GTTGTTGTGA TATCTCCATC GAAATTCCAC ACAATTTCTG
AAAATCTAAG CAACTTCACC ACTTAGTTAC CGTTTGTTCC CATAACCACA GATCCACCGT TTTGTTTTTT CATTCTATTT
TTCCGTTTTC CCGAAAAAGT GTGGGAAAAC AATGGAAACG ATGAACAAAG CCTTCGAGAA AGTGAAGATA ATGGTGGGAA
TGGACGTCGA AGACGAAGAG CAGCAAGCTG CAGCATTGGA AAACAGCAGC TCATTCGCCT TTGTGGACGA TTTCAACCGC
AACTGCACCT TGTCCACCAC ACAGAGACTA TATGGTTTTG CCATATGCTT TGCTGCTGGA TTAACTTGTA CACTATTGTC
TATGCTTGTT TTCTTCAAGC CAATCAAGTT TGCAATAGCA TTTACTCTTG GTAATTTGCT TTCACTTGGA AGCACAGCAT
TCCTGATAGG TCCTAAGAGG CAAGTGACAA TGATGCTTGA TCCTGTTCGT ATATATGCAA CTTCCATATA CATTGCAAGT
ATGATAATCG CCTTGTTTTG TGCTCTGTAT GTCCATAACA AGTTACTGAC ATTTCTTGCA CTTATTTTGG AGTTTGGGGC
ACTTGTTTGG TATAGTTTGA GCTACATCCC TTTTGCGAGG TCCATGGTTT CAAAGATCAT GGCTTCATGC TTTGACACTG
AATTTTAGGC TATAAACTCA AAAGATTGTG GCATTGTCGG TCAAACTCAC TTCATTGACA CCCTCAATAT CCCTTGAAGT
CCTAAAGAAA AGGGTTTCTG CCGCTGAAAT ACAGTTATGA ATTATGATTT TCTTTATTGT CTGCTCTTTC CTTTGGTGGA
GTCTTGTACA GGTTCTACCA GATTGTTAGA CTTAAAATGT TGTGCATTTG TATTATGTTG TCAATGAGCT AATGTAAAGA
TTTTCGTTTC TCTCAGCTCT GTCCTCTCAC TCTTTGACAA ATAACAGAAA GATCATAATG GGATAATACG TGGTGCAGGC
ATAAAACATA CTGCAGTGTA TATTCTTTAT TGAATGGGCA ACCGTGTATA TATACAATAG AGGAAGAGAG AGAAAAGTAA
AATAACA

[show][hide][copy]CDS

>Vigan.11G203400.01
ATGGAAACGA TGAACAAAGC CTTCGAGAAA GTGAAGATAA TGGTGGGAAT GGACGTCGAA GACGAAGAGC AGCAAGCTGC
AGCATTGGAA AACAGCAGCT CATTCGCCTT TGTGGACGAT TTCAACCGCA ACTGCACCTT GTCCACCACA CAGAGACTAT
ATGGTTTTGC CATATGCTTT GCTGCTGGAT TAACTTGTAC ACTATTGTCT ATGCTTGTTT TCTTCAAGCC AATCAAGTTT
GCAATAGCAT TTACTCTTGG TAATTTGCTT TCACTTGGAA GCACAGCATT CCTGATAGGT CCTAAGAGGC AAGTGACAAT
GATGCTTGAT CCTGTTCGTA TATATGCAAC TTCCATATAC ATTGCAAGTA TGATAATCGC CTTGTTTTGT GCTCTGTATG
TCCATAACAA GTTACTGACA TTTCTTGCAC TTATTTTGGA GTTTGGGGCA CTTGTTTGGT ATAGTTTGAG CTACATCCCT
TTTGCGAGGT CCATGGTTTC AAAGATCATG GCTTCATGCT TTGACACTGA ATTTTAG

[show][hide][copy]PROTEIN

>Vigan.11G203400.01
METMNKAFEK VKIMVGMDVE DEEQQAAALE NSSSFAFVDD FNRNCTLSTT QRLYGFAICF AAGLTCTLLS MLVFFKPIKF
AIAFTLGNLL SLGSTAFLIG PKRQVTMMLD PVRIYATSIY IASMIIALFC ALYVHNKLLT FLALILEFGA LVWYSLSYIP
FARSMVSKIM ASCFDTEF*