GBrowse Details

Vigan.11G203800.01

Basic Information:
Name: Vigan.11G203800.01
Multiple alignment
Variant Information
Position: Chr11:32888030..32889966 (- strand)
Length: 1937
Functional Information:
Description: Similar to uncharacterized protein. [C6TJ92, Glycine max]
GO: Biological Process: cellular aromatic compound metabolic process (GO:0006725)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: ferrous iron binding (GO:0008198)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen (GO:0016701)
InterPro: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (IPR004183)
Extradiol aromatic ring-opening dioxygenase, DODA type (IPR014436)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.46,1.99,33.30,51.05,22.97,28.17,30.09,78.71
Arabidopsis thaliana homolog: AT4G15093.1
Automatic updates:
Name: NM_001289208 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max extradiol ring-cleavage dioxygenase-like (LOC100798236), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:32888030..32888367 (- strand)
Length: 338
Type: three_prime_UTR
Position: Chr11:32888368..32888566 (- strand)
Length: 199
Type: CDS
Position: Chr11:32888919..32889286 (- strand)
Length: 368
Type: CDS
Position: Chr11:32889543..32889779 (- strand)
Length: 237
Type: CDS
Position: Chr11:32889780..32889966 (- strand)
Length: 187
Type: five_prime_UTR


>Vigan.11G203800.01
CTTGGAGTTG GTGGATTCTT CATATAAAGT GAAAGAAATG AAGTCGACTT ATTTGTGTCT CCTCCTTCAT TCTCTCTCCC
AAATTTGTGT GTTTTTGATG CAGTGCTGTG TTGTTTTGAG TGTGTGGCAA AACGAAGATT AAGCAAAAGA GAGAATATAA
AGAAAGAAAA GAAAGTTGGT GGTAGATATG GCGTTGAAGG AGACATTTTA CATATCTCAT GGATCACCCA CTTTGTCCAT
CGATGAATCC ATTCAGGCTA GGAAGTTTCT TCAGTCATGG AAGAACGACG TCTTTCCTCA CACACCCTCT TCAATTCTCG
TCATCTCCGG CCACTGGGAC ACCACAGTTC CCACGGTCAA CGTAGTTGAC TCCGTCAACG ACACCATCTA CGACTTCTAT
GGATTCCCCA AAGAAATGTA CCAGCTTAAA TATCCTGCTC CTGGAGCGCC AAAATTGGCA AGGAGGGTGA AGGAACTGCT
GAGAAAATCT GGTTTCAATC GTGTTGATGA AGATACAAAG CGAGGACTTG ACCATGGAGC TTGGGTTCCC CTGTTTTTGA
TGTACCCAGA AGCCGACATT CCAGTTTGTC AGCTGTCTGT TCAATCAAAC CAAGATGGAA CTTATCATTA TAACCTTGGA
AAGGCATTGG CCCCTCTTAA AGATGAAGGT GTGCTCATCA TGGGTTCTGG AAGTGCTGTT CATAACTTGA GAGCCATTAT
GCCTAACTCC CCTGTGCAGC CCTGGGCTCT AGAATTTGAT AATTGGTTGA AAGAGGCTCT TCTTGAAGGA AGATATGAAG
ATGTGAATCA TTATGAACAG AAAGCACCAC ATGCTAAAAA GGCTCATCCC TGGCCGGATC ATTTTTATCC CCTGCATGTT
GCAATTGGTG CCGCCGGTGA GAATTCAAAG GCCAAACTCA TCCACGGTAG TATTGAACTT GGCACTCTCT CTTATGCTTC
TTACCAGTTT ACATCAGCAA CTGGCAGTTG AGCTTCTTAA TGCAGAATTG CTGCTGTTCA TTTGTGCATC CTCTGTATAC
ATTTATTCAA TGTTTATGTA GATATGTTGT TTGCAAGTTT AGACTTGGGA TTCTGTGATG TATAACAAAT AATTCTGTGA
TTGTCAAGCT CCTTTTCTTA TGATCGCTGC GTTGTGGCTC ATAAAATGAG AAGGATATTA AAACTATGTT TTACAGTGAC
CTATTAAAAT ATGCCTATGG TTTTACTCAC TCTTCATTAA TTAAAATCAA GGTCTGATAG CATCTTTGCA TTTTTGAACT
TTCTAGTCTT TCCCGAATGA TCGTCTAATA TGAATGTGGT TTATAGTTC

>Vigan.11G203800.01
ATGGCGTTGA AGGAGACATT TTACATATCT CATGGATCAC CCACTTTGTC CATCGATGAA TCCATTCAGG CTAGGAAGTT
TCTTCAGTCA TGGAAGAACG ACGTCTTTCC TCACACACCC TCTTCAATTC TCGTCATCTC CGGCCACTGG GACACCACAG
TTCCCACGGT CAACGTAGTT GACTCCGTCA ACGACACCAT CTACGACTTC TATGGATTCC CCAAAGAAAT GTACCAGCTT
AAATATCCTG CTCCTGGAGC GCCAAAATTG GCAAGGAGGG TGAAGGAACT GCTGAGAAAA TCTGGTTTCA ATCGTGTTGA
TGAAGATACA AAGCGAGGAC TTGACCATGG AGCTTGGGTT CCCCTGTTTT TGATGTACCC AGAAGCCGAC ATTCCAGTTT
GTCAGCTGTC TGTTCAATCA AACCAAGATG GAACTTATCA TTATAACCTT GGAAAGGCAT TGGCCCCTCT TAAAGATGAA
GGTGTGCTCA TCATGGGTTC TGGAAGTGCT GTTCATAACT TGAGAGCCAT TATGCCTAAC TCCCCTGTGC AGCCCTGGGC
TCTAGAATTT GATAATTGGT TGAAAGAGGC TCTTCTTGAA GGAAGATATG AAGATGTGAA TCATTATGAA CAGAAAGCAC
CACATGCTAA AAAGGCTCAT CCCTGGCCGG ATCATTTTTA TCCCCTGCAT GTTGCAATTG GTGCCGCCGG TGAGAATTCA
AAGGCCAAAC TCATCCACGG TAGTATTGAA CTTGGCACTC TCTCTTATGC TTCTTACCAG TTTACATCAG CAACTGGCAG
TTGA

>Vigan.11G203800.01
MALKETFYIS HGSPTLSIDE SIQARKFLQS WKNDVFPHTP SSILVISGHW DTTVPTVNVV DSVNDTIYDF YGFPKEMYQL
KYPAPGAPKL ARRVKELLRK SGFNRVDEDT KRGLDHGAWV PLFLMYPEAD IPVCQLSVQS NQDGTYHYNL GKALAPLKDE
GVLIMGSGSA VHNLRAIMPN SPVQPWALEF DNWLKEALLE GRYEDVNHYE QKAPHAKKAH PWPDHFYPLH VAIGAAGENS
KAKLIHGSIE LGTLSYASYQ FTSATGS*