GBrowse Details

Vigan.11G208600.01

Basic Information:
Name: Vigan.11G208600.01
Multiple alignment
Variant Information
Position: Chr11:33402305..33408221 (- strand)
Length: 5917
Functional Information:
Description: Similar to Uncharacterized protein. [I1L3R0, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ATPase activity (GO:0016887)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: ABC transporter-like (IPR003439)
AAA+ ATPase domain (IPR003593)
ABC-2 type transporter (IPR013525)
ABC transporter, conserved site (IPR017871)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.18,5.94,70.37,28.17,0.04,16.75,0.08,21.25
Arabidopsis thaliana homolog: AT1G17840.1, AT1G51460.1, AT1G51500.1, AT3G21090.1
Automatic updates:
Name: MT533594 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula stigma exsertion 1 (SGE1) mRNA, complete cds.
PubMed ID: 32690757 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:33402305..33402604 (- strand)
Length: 300
Type: three_prime_UTR
Position: Chr11:33402605..33402943 (- strand)
Length: 339
Type: CDS
Position: Chr11:33403033..33403140 (- strand)
Length: 108
Type: CDS
Position: Chr11:33403582..33403854 (- strand)
Length: 273
Type: CDS
Position: Chr11:33403944..33404030 (- strand)
Length: 87
Type: CDS
Position: Chr11:33404139..33404333 (- strand)
Length: 195
Type: CDS
Position: Chr11:33404495..33404623 (- strand)
Length: 129
Type: CDS
Position: Chr11:33404772..33404894 (- strand)
Length: 123
Type: CDS
Position: Chr11:33405005..33405176 (- strand)
Length: 172
Type: CDS
Position: Chr11:33406284..33406573 (- strand)
Length: 290
Type: CDS
Position: Chr11:33407206..33407601 (- strand)
Length: 396
Type: CDS
Position: Chr11:33407602..33408221 (- strand)
Length: 620
Type: five_prime_UTR


>Vigan.11G208600.01
ACTAGCTGCA CCCATTAATT GATTGCTTCC ATATAATGGC TGAAACTTAT TGCTTCTTCT CTAAATATTT CCATCGAGAA
TTGAGCTCTC CCAAACAACG AATAGTATGT AGTAGTAGAT ATCATATCAT ATCATGGTGT TATAGCTGTT GTGTTCGTCA
TCCCTTGCAT CAGTTGGATC AGAATATATA ACACCCTTTG CTCCAATCAC TTCTTCTTGT TCATAACAAC AACTTACAAA
TCCTTTCAAC AGTTGCAACA AATCTATGTA TGCAACTCCA CAAGGCTCTT TTTGCATGAG CCATCATCTC TCTTAAGAAA
ACCCTTTCTT TCAGTCAAAA CTCTCCAATC ATACCATTCC CATTTCACCA CTCACACTTT TCTCTCCCTC CTATCCTATT
GTCCCCTTTT GGTTTTTCTA TCATAGTAAC TTCCTCATAT ATATACACTC ACATATTCTA TAGGTTTCAC TGCTTGGCTT
TTGAATTTGG TTCCTACCCT TTTTCTCTTT TGGTGGATCG GATTTGATCA GTACCACTGA ACTCTTTTGG AGAGTTTGGA
CCATATTGTA TTGAAGCCTA AAAGGTGAGT GTGTGAGAGG TTTGAAGAAA GTTAATTATC ATGAAAAACT CTGAGGCAAC
AACACATACT GGTATGGAGA TAGAAGCAAC AGCTAGGCCT TCTGGAAATG GTTCCACCCT ACCAGGGTTG AGTCCTCTCA
GTGAGACCCT TTGGAGAGAG AAGGCTAACT CAGAGATCAT TGGAGATGTT TCAGCAAGAC TCACATGGAA GGATCTGACC
GTGATGGTCA CTCTCAGCAA CGGTGAGACA CAAAATGTTT TGGAGGGTCT AACTGGTTAT GCTGAACCAG GAACCTTCAC
TGCTCTCATG GGGCCCTCAG GTTCTGGAAA ATCTACTCTT CTTGATGCAC TTTCCAGTCG CCTAGCTGCA AATGCCTTTC
TTTCAGGCAC CATCCTTCTC AATGGACGCA AAGCCAAACT CTCTTTTGGC ACTGCAGCTT ATGTGACACA AGATGATAAC
TTGATCGGTA CCCTAACAGT GAGGGAGACG ATATCATATT CAGCTCGTTT GCGTTTGCCT GATAACATGC CATGGGCAGA
TAAGAGAGCA TTGGTGGAGA GCACCATTGT GGCAATGGGA CTGCAAGATT GTGCAGACAC AGTGATTGGA AATTGGCATT
TGCGGGGTAT CAGTGGTGGG GAGAAGAGAA GGGTTAGCAT TGCCTTGGAA ATCTTGATGA GACCAAGGTT GCTTTTTCTT
GATGAGCCAA CCAGTGGACT TGACAGTGCT TCAGCATTCT TTGTGACTCA GACACTACGT GCCTTGGCAA GGGATGGGAG
AACCGTGATA GCCTCTATTC ATCAACCTAG CAGTGAAGTG TTTGAGTTAT TTGACCAATT GTACTTGCTT TCTAGTGGCA
AAACTGTTTA TTTTGGACAG GCTTCAGAGG CATATGAGTT CTTTGCACAA GCTGGTTTCC CTTGTCCTGC TTTGAGGAAC
CCTTCTGATC ATTTCCTCAG GTGCATCAAT TCTGACTTTG ACAAAGTCAA GGCCACTCTC AAAGGGTCCA TGAAACTGAG
GTTTGAGGGA AGCGATGATC CTTTGGACAA GATCACTACT GCCGAAGCAA TCAGAACTCT TATTGACTTC TACCGCACTT
CTCAGCACTC TTATGCCGCA ACACAAAAAG TGGATGAGAT ATCCAAAGTT AAGGGAACAG TGCTTGAAGC TGGAGGAAGT
GAGGCTAGTT TCTTGATGCA GTCTTACACT TTAACCAAAC GTTCCTTCAT CAACATGTCA AGGGACTTTG GCTACTACTG
GCTTAGGCTT GTTATCTACA TTGTGGTCAC TATCTGTATT GGAACCATTT ATTTGAATGT GGGGACAGGA TACAACTCTA
TTCTGGCCAG AGGTTCTTGT GCATCTTTTG TCTTTGGTTT TGTGACCTTC ATGTCAATTG GTGGATTCCC TTCATTTGTT
GAAGACATGA AGGTTTTCCA AAGGGAGAGG CTTAATGGTC ACTATGGTGT CACTGCATTT GTCATCAGCA ACACATTATC
TGCAATGCCC TTCCTGATTT TGATCACTTT TCTCTCTGGA ACAATCTGTT ACTTCATGGT TCGCCTACAC CCTGGCTTTT
GGCATTACCT CTTCTTTGTG CTGTGCCTTT ATGCCAGTGT CACAGTGGTT GAAAGCTTAA TGATGGCAAT TGCCAGCATT
GTCCCCAACT TCCTCATGGG CATCATTATT GGAGCAGGAA TTCAGGGCAT ATTCATGTTG GTCTCAGGCT ACTTTAGGCT
TCCACATGAT ATCCCAAAGC CAGTCTGGCG TTACCCTATG TCATACATCA GTTTCCATTT CTGGGCACTG CAGGGTCAGT
ACCAGAATGA TTTGAGGGGC TTGATATTTG ACAACCAGAC ACCAGAGCTT CCAAAGATAC CAGGAGAATA CATCTTGGAA
AAAGTGTTCC AAATAGATGT GAACAGATCG AAGTGGATTA ACCTGAGTGT GATCTTCAGC ATGATTGTGA TCTACCGCAT
TATATTCTTT ATCATGATAA AAATAAACGA AGATGTGACA CCATGGGTGA GAGGGTACAT GGCTAGAAGG AGAATGCAGC
AGAAGAGTGG AGCACAGAAC ACAACTATTG CACCTGATGT TCTCACTCAG TCACCATCTC TCAGAACCTA TGTTTCCCCT
CCAACAAAAT GAACTCTTCA AAACTTTTAC TCCTTTCATT ATCAACTAGG ATTAGATATA TATATATATC AGACAAAATT
CTTATTGCTT TTACACATTC TTGCTCTTTA ACCCTACTTT CAGTAAGTTA TCACTGCCTT CTTGTTTATA ATTTGAGAAA
AAATATCACT TTACTTCTAC TTTCTCCAGT CTTCATTCTC ATTCATGTTA TATATATATA GAGAGAGAAA GGGTATGATT
AATTTTGTTT CGCAAATACC ATTGTTAAAT ATGATTAGCC ATACTAATCA CTTGGTTAAT CATAATGGTC AT

>Vigan.11G208600.01
ATGAAAAACT CTGAGGCAAC AACACATACT GGTATGGAGA TAGAAGCAAC AGCTAGGCCT TCTGGAAATG GTTCCACCCT
ACCAGGGTTG AGTCCTCTCA GTGAGACCCT TTGGAGAGAG AAGGCTAACT CAGAGATCAT TGGAGATGTT TCAGCAAGAC
TCACATGGAA GGATCTGACC GTGATGGTCA CTCTCAGCAA CGGTGAGACA CAAAATGTTT TGGAGGGTCT AACTGGTTAT
GCTGAACCAG GAACCTTCAC TGCTCTCATG GGGCCCTCAG GTTCTGGAAA ATCTACTCTT CTTGATGCAC TTTCCAGTCG
CCTAGCTGCA AATGCCTTTC TTTCAGGCAC CATCCTTCTC AATGGACGCA AAGCCAAACT CTCTTTTGGC ACTGCAGCTT
ATGTGACACA AGATGATAAC TTGATCGGTA CCCTAACAGT GAGGGAGACG ATATCATATT CAGCTCGTTT GCGTTTGCCT
GATAACATGC CATGGGCAGA TAAGAGAGCA TTGGTGGAGA GCACCATTGT GGCAATGGGA CTGCAAGATT GTGCAGACAC
AGTGATTGGA AATTGGCATT TGCGGGGTAT CAGTGGTGGG GAGAAGAGAA GGGTTAGCAT TGCCTTGGAA ATCTTGATGA
GACCAAGGTT GCTTTTTCTT GATGAGCCAA CCAGTGGACT TGACAGTGCT TCAGCATTCT TTGTGACTCA GACACTACGT
GCCTTGGCAA GGGATGGGAG AACCGTGATA GCCTCTATTC ATCAACCTAG CAGTGAAGTG TTTGAGTTAT TTGACCAATT
GTACTTGCTT TCTAGTGGCA AAACTGTTTA TTTTGGACAG GCTTCAGAGG CATATGAGTT CTTTGCACAA GCTGGTTTCC
CTTGTCCTGC TTTGAGGAAC CCTTCTGATC ATTTCCTCAG GTGCATCAAT TCTGACTTTG ACAAAGTCAA GGCCACTCTC
AAAGGGTCCA TGAAACTGAG GTTTGAGGGA AGCGATGATC CTTTGGACAA GATCACTACT GCCGAAGCAA TCAGAACTCT
TATTGACTTC TACCGCACTT CTCAGCACTC TTATGCCGCA ACACAAAAAG TGGATGAGAT ATCCAAAGTT AAGGGAACAG
TGCTTGAAGC TGGAGGAAGT GAGGCTAGTT TCTTGATGCA GTCTTACACT TTAACCAAAC GTTCCTTCAT CAACATGTCA
AGGGACTTTG GCTACTACTG GCTTAGGCTT GTTATCTACA TTGTGGTCAC TATCTGTATT GGAACCATTT ATTTGAATGT
GGGGACAGGA TACAACTCTA TTCTGGCCAG AGGTTCTTGT GCATCTTTTG TCTTTGGTTT TGTGACCTTC ATGTCAATTG
GTGGATTCCC TTCATTTGTT GAAGACATGA AGGTTTTCCA AAGGGAGAGG CTTAATGGTC ACTATGGTGT CACTGCATTT
GTCATCAGCA ACACATTATC TGCAATGCCC TTCCTGATTT TGATCACTTT TCTCTCTGGA ACAATCTGTT ACTTCATGGT
TCGCCTACAC CCTGGCTTTT GGCATTACCT CTTCTTTGTG CTGTGCCTTT ATGCCAGTGT CACAGTGGTT GAAAGCTTAA
TGATGGCAAT TGCCAGCATT GTCCCCAACT TCCTCATGGG CATCATTATT GGAGCAGGAA TTCAGGGCAT ATTCATGTTG
GTCTCAGGCT ACTTTAGGCT TCCACATGAT ATCCCAAAGC CAGTCTGGCG TTACCCTATG TCATACATCA GTTTCCATTT
CTGGGCACTG CAGGGTCAGT ACCAGAATGA TTTGAGGGGC TTGATATTTG ACAACCAGAC ACCAGAGCTT CCAAAGATAC
CAGGAGAATA CATCTTGGAA AAAGTGTTCC AAATAGATGT GAACAGATCG AAGTGGATTA ACCTGAGTGT GATCTTCAGC
ATGATTGTGA TCTACCGCAT TATATTCTTT ATCATGATAA AAATAAACGA AGATGTGACA CCATGGGTGA GAGGGTACAT
GGCTAGAAGG AGAATGCAGC AGAAGAGTGG AGCACAGAAC ACAACTATTG CACCTGATGT TCTCACTCAG TCACCATCTC
TCAGAACCTA TGTTTCCCCT CCAACAAAAT GA

>Vigan.11G208600.01
MKNSEATTHT GMEIEATARP SGNGSTLPGL SPLSETLWRE KANSEIIGDV SARLTWKDLT VMVTLSNGET QNVLEGLTGY
AEPGTFTALM GPSGSGKSTL LDALSSRLAA NAFLSGTILL NGRKAKLSFG TAAYVTQDDN LIGTLTVRET ISYSARLRLP
DNMPWADKRA LVESTIVAMG LQDCADTVIG NWHLRGISGG EKRRVSIALE ILMRPRLLFL DEPTSGLDSA SAFFVTQTLR
ALARDGRTVI ASIHQPSSEV FELFDQLYLL SSGKTVYFGQ ASEAYEFFAQ AGFPCPALRN PSDHFLRCIN SDFDKVKATL
KGSMKLRFEG SDDPLDKITT AEAIRTLIDF YRTSQHSYAA TQKVDEISKV KGTVLEAGGS EASFLMQSYT LTKRSFINMS
RDFGYYWLRL VIYIVVTICI GTIYLNVGTG YNSILARGSC ASFVFGFVTF MSIGGFPSFV EDMKVFQRER LNGHYGVTAF
VISNTLSAMP FLILITFLSG TICYFMVRLH PGFWHYLFFV LCLYASVTVV ESLMMAIASI VPNFLMGIII GAGIQGIFML
VSGYFRLPHD IPKPVWRYPM SYISFHFWAL QGQYQNDLRG LIFDNQTPEL PKIPGEYILE KVFQIDVNRS KWINLSVIFS
MIVIYRIIFF IMIKINEDVT PWVRGYMARR RMQQKSGAQN TTIAPDVLTQ SPSLRTYVSP PTK*