GBrowse Details

Vigan.11G209200.01

Basic Information:
Name: Vigan.11G209200.01
Multiple alignment
Variant Information
Position: Chr11:33496815..33502422 (- strand)
Length: 5608
Functional Information:
Description: Similar to aquaporin TIP-type alpha. [XP_003534069.1, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1461.92,612.38,0.23,0.30,0.09,1425.15,0.30,0.31
Arabidopsis thaliana homolog: AT1G73190.1
Automatic updates:
Name: MK133348 NCBI(nuccore)
Organism: Arachis hypogaea
Description: Arachis hypogaea strain Zhongkaihua 10 tonoplast intrinsic protein 3 (TIP3) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:33496815..33500855 (- strand)
Length: 4041
Type: three_prime_UTR
Position: Chr11:33500856..33501242 (- strand)
Length: 387
Type: CDS
Position: Chr11:33501540..33501790 (- strand)
Length: 251
Type: CDS
Position: Chr11:33502049..33502181 (- strand)
Length: 133
Type: CDS
Position: Chr11:33502182..33502422 (- strand)
Length: 241
Type: five_prime_UTR


>Vigan.11G209200.01
GGTGTCTCTC GACTAAGTTC TACTCTGAGT TTCCCCTTAT AAGCACGATC ACTCCACCTT TTTCATACAT GCACCATAGT
TTCTCACCTT CCAAATCTCC ATTCTGCAAA GAGAAAATCC TTTTCAGAAA AACGTAATAC AGTCTCAGCT GGCCAAGGAT
CTTTGATCTT GAAAGGCTAG GTGTGTGACA ACCTTAGTTG GTAGTCCTAA GGAGTTGTGC AAGAGTGAGC TTAATTTGCT
GATGGCAACC CGCAGATATG CTTTTGGAAG GGCTGATGAG GCCACTCATC CTGACTCCAT GAGGGCCACT TTGGCTGAAT
TTGCCTCAAC TTTCATCTTT GTCTTTGCTG GAGAAGGCTC TGGCCTTGCT TTGGTTAAGA TTTACCAGGA TTCAGCTTTC
TCAGCTGGTG AACTGTTAGC ACTTGCACTT GCCCATGCAT TTGCTCTATT TGCTGCTGTA TCTGCTAGCA TGCATGTATC
AGGTGGCCAT GTCAACCCAG CTGTGACATT CGGTGCTCTC GTTGGGGGGA GGATCTCTGT TGTTCGTGCA GTATACTACT
GGGTTGCTCA ACTTCTGGGT TCTATTGTGG CTGCTCTTGT GCTCAGGCTT GTCACTAATA ACATGAGACC ATCAGGGTTC
CACATAGCAC CAGGTGTTGG AGTAGGACAC ATGTTTATAC TTGAGATTGT GATGACATTT GGGCTGATGT ATACTGTATA
TGCTACTGCA ATAGATCCCA AAAGGGGCGC TGTTAGCAAT ATCGCACCCT TGGCAATTGG GCTCATTGTT GGAGCAAACA
TCCTTGTTGG TGGGCCATTT GATGGAGCAT GCATGAACCC TGCTCTGGCT TTTGGACCTT CCCTAGTGGG CTGGAGATGG
CACCAGCACT GGATCTTCTG GGTGGGTCCA TTGATTGGGG CAGCACTGGC AGCACTGGTG TATGAATATG CTGTGATCCC
AATTGAACCT CCCCCACACC ACCACCAGCC CTTGCCTTCT GAAGATTACT AAGTTGTTTC TACCAGTTGT TGCATTTGTG
CATCAAAATG TGTTATCAGT TGCTTTTTGT CATCTAAATA AAATGGTATG CTTGTGTTTT CCTGTGTTTT TTCAGCCAGC
CTTCTACTTG AGTGGTTACT AGGCTTCTGC ATGTGCATGT TTATTTTCTT GATTTGGGGT CACAACTTCC AAAAACCCAG
TTGAGTGTGT AGCTGTTGTA TTTACACACT GAATAAAATG TGCGAAACCG TATGTTGTGT AGCGATGCTG CATCAGATTA
TATCACTCTT TCATGTAGAT TACTATTACT CTAAAAGTAA CTAACAGGCA TTTAAGTAGG GAATACTAAT AAAAGGACTG
CAAAAGATAA CAGTGGAACC ATTCAAGATT TTACATTTGG CTTGTGTTAC AGCAACTTTC ACCTTGCAGA GGACTTATAT
ATTGATTTAA TCCAATAAAA ACAATACAAA AGAGGAATAT ATAACAACAA ATATATCCAG CTTACTAAAG TCAGTAGTGA
ATACTATACA TCTACGGTTT CTGTTTGCTT ATAAAATCTG GCGACCCAAG GGGCAAGTTG AGTATTATGA GGTGTCCTGG
GGTTTGCAGA GTAATAATCA GACCAATAGC AAGGGCTGAG TCTATCAGCA AATTTGTTGT CAGCATAAAG GCAAAACGGT
AGCCAATTTT CACCTCCATT CATTCTTCTC TTCCTTTCCC TTGGATAAGC TAAGGGTGCC TGAACATACC TGCAATTGTG
TCAAAACCAT TTAGCAACAC AGCAAGTTTA CTCATTTCCA GTCCAACCAA CAATTATAAT TAAAAAATAA TAGGCTAAAA
CACATTTTTG GTTCTTCCTC TTGTTCTCCT TTGATTTTCA TTTTTCTTGA TGTTTCTGTT ATCTTGTTGA TTAAATTCAT
CTTTCTTTCA TCTTTTTGAA ATATTTACTT TAACACAATT GAAACTTATA AGTTTAAGAG ACTAAACCGC AAAAAAATAA
AGGACAGATG GTATTTTAAA CCAAAATACA ACTACTAACA GAACACACCT GATACCATCA ACAACAGCAT CCCAGCAGAA
GTGAGTATGA CCGAACACAT GACAAGAAGA CGCATCCTTC TTTCCCTTAG CTCCATGTAT GGATCTTATT CGATCCTCAA
GAGAGTCTGA GCCAATTATC TTTGGAAGGT TGGGGTAGAA TAACATCCTC TTCTCGGGAC AAAGTTCCTG CCTGTGAACG
TGCAGCCATT ACCACAATAA ATCAATATAC TCATCTTTAG AAGTAACACA ATCACAAAAG TGTTATTGTT TAAGCAGCTC
CTCAGGCACC AAGAGACGTG TATGATAAAC TAATATCACG CATGTTGGTG TTTATGAGGA ATTATGTAAA GAAAAGTCAC
AATTTGTACT TTGACATCAT GCATTCAAGC ATTATGGGCC ACTTCTTATT AGTTTAGTTT TGGTGTCCAC AAGAGCCATG
TAACTGAGTG GATTCTAGAC TCATTTGGAA ATTAGGAACG TGAGCACCAT TACACTGACA TAAACATCAT CTACATAGCA
ATAAGGACAG AAAAACTTGC AATGCAGATA AAACAAGTGA TGTGGCTAAG CAGAAGAACA GTTTTACGTA GTTGGCACTG
ACAACAACAT AGCTACAAGC CTACATCTAA AAAATGAGCG AGGGAGACTA AAAGGGACTT TAGAGAAAAT TACCAAGAGG
GTTCTCACGG TGAATATCTG AGAATTGGTT TTTTAGCCGA ATCCTATAGC GTCGAGTGAT TCATGCAATA AATAAGGTTA
ATTGTTCTTA CGGTAGTTGT TATTACCTAC ATCTTTTCAC AAGTGTCAAA TCATATATCT TCAGCACAGA ATTGGAAGGT
TACATAGCAC AACCTTGTGA GTTTTTAGGA ATGAGCTATC CTTTACATAA TGCAGGGCGA AATTAAAAAA GAATAGATGG
CTACGGTCAA GCAAAATATC AAATAACACC ATGGATTAAG TAACTGCTAG TCTGCTACAA AATTTCCAAG TCAATCATCT
GAATTGTTCA ACACAATAAA CAGTATCGTG TAACGAGATC ATGTGTGATA AATCTATGAA CACTAATCAA TTTCTCCGGA
AAACCTAAGT TCTATAGTGA AAAAAAAAAT ACTACAAAAG GGAATTAATT AAAGTTTTTC AGGTTGTCAA TTAACCACCA
CAGTGCCACA ACATAATCGG TTCCCAGAGA TGATTAGGAA AGAACAGTAA AGGAGTAAAG GACTACTGCA TCATTTTCGT
AACATGATTA GATAGATTGT CAGACCATGT CAGTTCAAAC AGCACATCAT ACATGCATAG AAACAAATGA GTAAACCAGA
CCAATAAAGC TGCAATTTAA ATGATAGATT TAACCACCTG GGAACAAAAT GGGAAAAGGT AATGATGTGA TCACAGGTCA
TCTGAACGTC CTTTATTACT TCCATTTGTT TATCATTCAT GGCATCAAAA TATGAAGCGA GGGACATATC ACCACTTGAA
AGGCCCTCTG GCCACTTGCA CGCATAGAAG TCTTTACATG CCTAAGAAAA GGGTATAGAT TTCCATCAAT ATCTATCATA
TTGGAAACTA CTTGAAAGTT AGAACAAAAC TATAGCAATA GACATATTTG AATACTAAAA TGCTATTCAA GAAGAATCTT
CCTACCATTA TCTGAGCACC TAACTTTGCC CAAAAGCAGG CACAAGGAAC TGTAAAAAAT AATATTTTAT GTCCGGAGCT
AAGTCGTGTA TTAGAGTGAC ACTTTTAACA CAGTTAGTTC TATTCATTTC ATTAAGGCCA AATTGATGGT ATCCCTAATA
CCCAAAAAAA CCAACAGCAT TATCTATATT CTTTTACAAC TTACTACTTC CCCACTGTGA AGAACAACCT CCAAAAAATG
TACTAAATGT CAACGAAGCA CGGTCCATTT TAACATATGC TGAAATGTAA GTCTTGATTT TAAAGAATGG TAGCGGCAAG
AATCAAACTC TCAAAAGCTA GATCTTTTAG GTGACGGTTT AAAATTGATT TTACATCTCT AACAACTTTG CATGAAGCTT
GCATCACAAC AACCAACCTA CATTATCTTG GATATATATC ATCAATCTAG CGTAATACAG CCCTTACAAA ACTGTTGAGA
GATATCTTCC GGCTGCGGTT CTCTGATTTA GTGCTCCATC TTACGAAAAG AGTGAATAGT GCATTGACTT GGGCAGCCTT
TCCACACAAT ATCAAAAGCT GAGCTACTCG GTTTCTTCTT ATCTTATCTA CCACTAAAAT CTTTGCCTTT ACCATGGTCT
ATATCATGCT TGACTTTCTT CTTGGTTATC GTTTGCTCCT TACTACTTTG CATTTTTTCT TAAAAAAAAG ATATATAGAT
AATGTCAACC TTAAGAGTGA CTCAGCATAT TGTTTTATCA GGACTTGATT GGAAATTTCT AAATTCTACC AACTAACTAA
TCTTGTTAAT CTGATGACCT TAGCATGACT GATATATTTC AGCTCAATTG ATTGGCTTAA GTGAAATTGT CCAACAAATA
TATAAACAAT CCAAGAATTG AGACAGGTGA TGTGAAATTT TCCAACATAT TTACACAATA ATTACCAAAC CATCACAAGC
ATGGTATTTC AACACCAGGG AACAATTTCA GGGATCGTGA TTATATTATA TTTTGTACAC TAGTAACACC ATATCCATAT
ACTTAAATCA CATACATGTT TATCACACAA GACAGAAATT GGCCTCATCC ATTATGCAGA TAGTCCTTCT CAATCAAGCA
CTGTAGGAAA TCAAGCGCAT GATCAGACCA TCAACTATTT TTTGCCAAAT GGCTTACTAG GAGTTAAGGA GAATAGTCAC
CATCTCCAAA GACGGGATGC GAAAGCCTGT TATGTCCTTC TCTTTGTCAA AGCTCTGTCA AAGAAGCAGG TTGAGCATTC
AAATAAATTG TCAGTAAGGA AAACTTTGGA TCCAGTCCGC CACATGGTAT ATAAGATTGA GGAGCTAAAA ACTGTCACTA
TATAAGTAAT CAC

>Vigan.11G209200.01
ATGGCAACCC GCAGATATGC TTTTGGAAGG GCTGATGAGG CCACTCATCC TGACTCCATG AGGGCCACTT TGGCTGAATT
TGCCTCAACT TTCATCTTTG TCTTTGCTGG AGAAGGCTCT GGCCTTGCTT TGGTTAAGAT TTACCAGGAT TCAGCTTTCT
CAGCTGGTGA ACTGTTAGCA CTTGCACTTG CCCATGCATT TGCTCTATTT GCTGCTGTAT CTGCTAGCAT GCATGTATCA
GGTGGCCATG TCAACCCAGC TGTGACATTC GGTGCTCTCG TTGGGGGGAG GATCTCTGTT GTTCGTGCAG TATACTACTG
GGTTGCTCAA CTTCTGGGTT CTATTGTGGC TGCTCTTGTG CTCAGGCTTG TCACTAATAA CATGAGACCA TCAGGGTTCC
ACATAGCACC AGGTGTTGGA GTAGGACACA TGTTTATACT TGAGATTGTG ATGACATTTG GGCTGATGTA TACTGTATAT
GCTACTGCAA TAGATCCCAA AAGGGGCGCT GTTAGCAATA TCGCACCCTT GGCAATTGGG CTCATTGTTG GAGCAAACAT
CCTTGTTGGT GGGCCATTTG ATGGAGCATG CATGAACCCT GCTCTGGCTT TTGGACCTTC CCTAGTGGGC TGGAGATGGC
ACCAGCACTG GATCTTCTGG GTGGGTCCAT TGATTGGGGC AGCACTGGCA GCACTGGTGT ATGAATATGC TGTGATCCCA
ATTGAACCTC CCCCACACCA CCACCAGCCC TTGCCTTCTG AAGATTACTA A

>Vigan.11G209200.01
MATRRYAFGR ADEATHPDSM RATLAEFAST FIFVFAGEGS GLALVKIYQD SAFSAGELLA LALAHAFALF AAVSASMHVS
GGHVNPAVTF GALVGGRISV VRAVYYWVAQ LLGSIVAALV LRLVTNNMRP SGFHIAPGVG VGHMFILEIV MTFGLMYTVY
ATAIDPKRGA VSNIAPLAIG LIVGANILVG GPFDGACMNP ALAFGPSLVG WRWHQHWIFW VGPLIGAALA ALVYEYAVIP
IEPPPHHHQP LPSEDY*