VIGGS:GBrowse

Vigan.11G212900.01

Basic Information:

Name:	Vigan.11G212900.01 Multiple alignment Variant Information
Position:	Chr11:33853426..33857425 (+ strand)
Length:	4000

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MQH3, Glycine max]
GO:	Biological Process: metabolic process (GO:0008152)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: ATP citrate synthase activity (GO:0003878)
	Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775)
	Molecular Function: cofactor binding (GO:0048037)
InterPro:	CoA-binding (IPR003781)
	Succinyl-CoA ligase, alpha subunit (IPR005810)
	ATP-citrate lyase/succinyl-CoA ligase (IPR005811)
	NAD(P)-binding domain (IPR016040)
	Succinyl-CoA synthetase-like (IPR016102)
	ATP-citrate lyase/succinyl-CoA ligase, active site (IPR017440)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:32.35,33.01,71.54,34.39,73.30,108.98,65.90,45.04
Arabidopsis thaliana homolog:	AT5G08300.1, AT5G23250.1

Automatic updates:

Name:	NM_001254276 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like (LOC100782001), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:33853426..33853500 (+ strand)
Length:	75
Type:	five_prime_UTR

Position:	Chr11:33853501..33853686 (+ strand)
Length:	186
Type:	CDS

Position:	Chr11:33853812..33854021 (+ strand)
Length:	210
Type:	CDS

Position:	Chr11:33854476..33854646 (+ strand)
Length:	171
Type:	CDS

Position:	Chr11:33855170..33855293 (+ strand)
Length:	124
Type:	CDS

Position:	Chr11:33855453..33855514 (+ strand)
Length:	62
Type:	CDS

Position:	Chr11:33856043..33856124 (+ strand)
Length:	82
Type:	CDS

Position:	Chr11:33856892..33857031 (+ strand)
Length:	140
Type:	CDS

Position:	Chr11:33857032..33857425 (+ strand)
Length:	394
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G212900.01
TGGGTTTTGA TCTGTGAAAC AGCAGCAATA GTAGTACAGG AATTCACATT CTCCACTCAA AATACAGAGA CAAAAATGGG
AAGACAAGCC GTCACCAGAT TGCTGTCCTC TATCGCCTCG CGCCGCCATG GCCTCCGCCA ATTCTCGGCG GCCACGCCGG
CTGTGTTCGT CGACAAGAGC ACACGCGTGA TCTGCCAAGG CATCACCGGC AAGAACGGCA CCTTTCACAC CGAACAAGCC
ATCGAATACG GCACCAACAT GGTTGGTGGT GTAACTCCTA AGAAGGGTGG AACCGAACAC CTGGGCCTTC CCGTCTTCAA
CACTGTCGCT GAAGCGAAGG CGGAAACCAA GGCCAACGCC TCCGTCATCT ACGTTCCTCC GCCGTTCGCT GCCGCCGCCA
TCATGGAAGC CATGGAGGCT GAGCTGGATC TTGTCGTCTG CATCACCGAG GGCATTCCTC AACACGACAT GGTGCGAGTT
AAGGCAGCAC TTAACAGGCA GTCCAAGACT CGTCTGATAG GACCAAACTG CCCTGGTATT ATCAAGCCTG GGGAATGTAA
AATTGGAATC ATGCCAGGAT ATATTCACAA GCCCGGTCGC ATAGGAATTG TCTCTCGTTC TGGTACCTTG ACGTATGAAG
CAGTTTTCCA AACAACTGCT GTTGGCCTTG GACAATCCAC TTGTGTGGGT ATAGGAGGAG ACCCCTTTAA TGGAACAAAC
TTCGTTGACT GCCTTAGGAA GTTTCTAGCT GATCCTCAAA CAGAAGGTAT AATTCTTATA GGAGAGATAG GAGGAACTGC
GGAAGAGGAT GCTGCTGCAC TAATTAAGGA AAGCGGCACT GAGAAGCCTG TTGTTGCATT TATTGCTGGT TTGACTGCCC
CTCCTGGCCG TCGAATGGGT CATGCTGGAG CTATTGTGTC GGGCGGCAAG GGCACTGCAC AAGACAAAAT TAAAACCCTC
AGAGAAGCTG GGGTGACAGT CGTGGAATCC CCCGCCAAAA TTGGAGCTGC CATGCTAGAC GTTTTCAAGC AGAGGGGCTT
GGTGCAATAG TTTGGGTTGA TTTAATTTCA TCAAATCATT TTGGGGCACA TTATTTATAA CATGTTCAAA ATTTCTTGAT
TCCCATTGGT AATGATGGGC TATTTTTCCC TTTTTTAGTT TTGGAAGTTA CGAAGAGGTG CACCAAAATA AAATTCAAGA
TGCTTTATAT TTGCGGAAGT TTGAAACGTC CTCTTTGAAT TCCGGTTTTC GTTGCTTTGA TTTGTAAACG CGTACCCTCT
GCCAATGAAT TTCGGGCAAC TAAATTGACT TAAAATTAAA TGTCTAGTCT ATAACCTGGG GGTCAGTTAT GTCCTATGAT
AAAATTGTGT GAATTTGTGG TAGCGTTGTT ATAGAGACAC TTTTGTTACG ATGACAGACA TTAGAGTTAG ACTTAAATAT
CCAC

[show][hide][copy]CDS

>Vigan.11G212900.01
ATGGGAAGAC AAGCCGTCAC CAGATTGCTG TCCTCTATCG CCTCGCGCCG CCATGGCCTC CGCCAATTCT CGGCGGCCAC
GCCGGCTGTG TTCGTCGACA AGAGCACACG CGTGATCTGC CAAGGCATCA CCGGCAAGAA CGGCACCTTT CACACCGAAC
AAGCCATCGA ATACGGCACC AACATGGTTG GTGGTGTAAC TCCTAAGAAG GGTGGAACCG AACACCTGGG CCTTCCCGTC
TTCAACACTG TCGCTGAAGC GAAGGCGGAA ACCAAGGCCA ACGCCTCCGT CATCTACGTT CCTCCGCCGT TCGCTGCCGC
CGCCATCATG GAAGCCATGG AGGCTGAGCT GGATCTTGTC GTCTGCATCA CCGAGGGCAT TCCTCAACAC GACATGGTGC
GAGTTAAGGC AGCACTTAAC AGGCAGTCCA AGACTCGTCT GATAGGACCA AACTGCCCTG GTATTATCAA GCCTGGGGAA
TGTAAAATTG GAATCATGCC AGGATATATT CACAAGCCCG GTCGCATAGG AATTGTCTCT CGTTCTGGTA CCTTGACGTA
TGAAGCAGTT TTCCAAACAA CTGCTGTTGG CCTTGGACAA TCCACTTGTG TGGGTATAGG AGGAGACCCC TTTAATGGAA
CAAACTTCGT TGACTGCCTT AGGAAGTTTC TAGCTGATCC TCAAACAGAA GGTATAATTC TTATAGGAGA GATAGGAGGA
ACTGCGGAAG AGGATGCTGC TGCACTAATT AAGGAAAGCG GCACTGAGAA GCCTGTTGTT GCATTTATTG CTGGTTTGAC
TGCCCCTCCT GGCCGTCGAA TGGGTCATGC TGGAGCTATT GTGTCGGGCG GCAAGGGCAC TGCACAAGAC AAAATTAAAA
CCCTCAGAGA AGCTGGGGTG ACAGTCGTGG AATCCCCCGC CAAAATTGGA GCTGCCATGC TAGACGTTTT CAAGCAGAGG
GGCTTGGTGC AATAG

[show][hide][copy]PROTEIN

>Vigan.11G212900.01
MGRQAVTRLL SSIASRRHGL RQFSAATPAV FVDKSTRVIC QGITGKNGTF HTEQAIEYGT NMVGGVTPKK GGTEHLGLPV
FNTVAEAKAE TKANASVIYV PPPFAAAAIM EAMEAELDLV VCITEGIPQH DMVRVKAALN RQSKTRLIGP NCPGIIKPGE
CKIGIMPGYI HKPGRIGIVS RSGTLTYEAV FQTTAVGLGQ STCVGIGGDP FNGTNFVDCL RKFLADPQTE GIILIGEIGG
TAEEDAAALI KESGTEKPVV AFIAGLTAPP GRRMGHAGAI VSGGKGTAQD KIKTLREAGV TVVESPAKIG AAMLDVFKQR
GLVQ*