GBrowse Details

Vigan.11G220900.01

Basic Information:
Name: Vigan.11G220900.01
Multiple alignment
Variant Information
Position: Chr11:34742602..34746068 (- strand)
Length: 3467
Functional Information:
Description: Similar to Annexin. [V7C5L5, Phaseolus vulgaris]
GO: Molecular Function: calcium ion binding (GO:0005509)
Molecular Function: calcium-dependent phospholipid binding (GO:0005544)
InterPro: Annexin (IPR001464)
Annexin, plant (IPR009118)
Annexin repeat, conserved site (IPR018252)
Annexin repeat (IPR018502)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:55.05,20.79,83.13,61.89,39.30,46.59,100.08,44.70
Arabidopsis thaliana homolog: AT1G68090.1
Automatic updates:
Name: NM_001253211 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max annexin D5-like (LOC100820062), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:34742602..34742832 (- strand)
Length: 231
Type: three_prime_UTR
Position: Chr11:34742833..34743036 (- strand)
Length: 204
Type: CDS
Position: Chr11:34743865..34743954 (- strand)
Length: 90
Type: CDS
Position: Chr11:34744041..34744256 (- strand)
Length: 216
Type: CDS
Position: Chr11:34744536..34744757 (- strand)
Length: 222
Type: CDS
Position: Chr11:34745215..34745360 (- strand)
Length: 146
Type: CDS
Position: Chr11:34745758..34745833 (- strand)
Length: 76
Type: CDS
Position: Chr11:34745834..34746068 (- strand)
Length: 235
Type: five_prime_UTR


>Vigan.11G220900.01
AAAGGAATGG CTTTTTTTCA GCTCAAGACA AGAAGTGGAG ACAACAAAGT TACTTTAGTA GAAGAAAGTG GTTGGGTAGG
ACATGTTGAA GAAAGATGAA ATTAATGTTT TCTAAATGCG GTGGACGGAG AAGAAGACAT TGAATTGAAT AATTCCACCC
ATCGGTGTTA TCTTCTCATA ACATTTTTCT CTATTTTTCC AACTTCTCTT CTGAGAGTTT CTCACAGGAA TCAAGATGGC
TACTTTGACT GTGCCCCCAG TTCCTCCTTC TCCTAGAGAT GATGCACTGC AACTTTACCG TGCCTTTAAG GGATTGGGTT
GTGATACCAG TGCTGTTATC AATCTTCTTG CTCATCGTGA TGCTACACAG CGTGCCTACA TCCAACAAGA GTACAAAACA
ATGTATTCTG AGGAACTTTC CAAACGTTTA GCTTCAGAGC TTAGTGGAAA GTTAGAGAGT GCAGTTCTGA TGTGGTTGAA
AGACCCTGCA GGACGTGATG CATCAATCAT TAGGAAGTCT CTGGTAGAGA TCCGAAGCCT TGAAGGTGCT ACTGAAGTTA
TATGTTCACG AACTCCATCT CAGCTGCAGT ATTTAAAACA GGTCTACCAT TCATTGTTTG GTGTTTATCT TGAGCATGAT
ATTCAAGCAA ACACCAGCCC CGGGAGTGAT CATCAAAAGT TGTTGCTTGC ATATATAAGC ACACCTCGTC CTGAAGGCCC
TGAAGTTAAC AGAGAAATTG CTCAGAAGGA TGCAAAAGTT CTTTACAAAG CAGGGGAGAA GAAACTAGGA ACTGATGAAA
AGTCCTTTAT CCACATATTC AGTGAACGGA GTGCTGCACA TTTGGCTGCT GTCAGTGCTT ATTACCATGA CATGTATGGT
CATTCTCTGA AGAAGGCAAT AAAGAATGAA ACATCTGGAC TGTTTGAACT TGCACTTTTG ACAATTGTCC AATGTGCCAT
TCATCCTGGA AAGTACTTTG CTAAGGTTTT GCACAAGGCA ATGAAAGGTT TGGGGACTGA TGATTCCACA CTGATAAGAG
TGATTGTGAC AAGGACAGAG GTTGACATGC AGTATATCAA AGCAGAATAT TCAAAGAAAC ACAAGAAGAC TCTGAATGAT
GCAGTTCACT CAGAAACATC TGGTCACTAC AGAGCTTTTC TTCTCTCACT TTTAGGCCCT AATATCTAGC CAACAAGATG
TTCAATGTGG GATAAACTCA CCCCTCTGAT GGTTTAAGAT TGGTTTGTTG CAGTTTGTGA TCCATGTAGT GTAACCGATC
TCTTGTAAAA TAAGGTTGTT GTTATTGTTT TGTACACTTG TACTAATGCT TTGAGAGTAT TAGTTTCAGC GTAATGCATT
GATGAAGAAC TTTTGTGTAT TAAATATATA TGTTTTTTTC TTGTTTTAAC AGTCAAATTG 

>Vigan.11G220900.01
ATGGCTACTT TGACTGTGCC CCCAGTTCCT CCTTCTCCTA GAGATGATGC ACTGCAACTT TACCGTGCCT TTAAGGGATT
GGGTTGTGAT ACCAGTGCTG TTATCAATCT TCTTGCTCAT CGTGATGCTA CACAGCGTGC CTACATCCAA CAAGAGTACA
AAACAATGTA TTCTGAGGAA CTTTCCAAAC GTTTAGCTTC AGAGCTTAGT GGAAAGTTAG AGAGTGCAGT TCTGATGTGG
TTGAAAGACC CTGCAGGACG TGATGCATCA ATCATTAGGA AGTCTCTGGT AGAGATCCGA AGCCTTGAAG GTGCTACTGA
AGTTATATGT TCACGAACTC CATCTCAGCT GCAGTATTTA AAACAGGTCT ACCATTCATT GTTTGGTGTT TATCTTGAGC
ATGATATTCA AGCAAACACC AGCCCCGGGA GTGATCATCA AAAGTTGTTG CTTGCATATA TAAGCACACC TCGTCCTGAA
GGCCCTGAAG TTAACAGAGA AATTGCTCAG AAGGATGCAA AAGTTCTTTA CAAAGCAGGG GAGAAGAAAC TAGGAACTGA
TGAAAAGTCC TTTATCCACA TATTCAGTGA ACGGAGTGCT GCACATTTGG CTGCTGTCAG TGCTTATTAC CATGACATGT
ATGGTCATTC TCTGAAGAAG GCAATAAAGA ATGAAACATC TGGACTGTTT GAACTTGCAC TTTTGACAAT TGTCCAATGT
GCCATTCATC CTGGAAAGTA CTTTGCTAAG GTTTTGCACA AGGCAATGAA AGGTTTGGGG ACTGATGATT CCACACTGAT
AAGAGTGATT GTGACAAGGA CAGAGGTTGA CATGCAGTAT ATCAAAGCAG AATATTCAAA GAAACACAAG AAGACTCTGA
ATGATGCAGT TCACTCAGAA ACATCTGGTC ACTACAGAGC TTTTCTTCTC TCACTTTTAG GCCCTAATAT CTAG

>Vigan.11G220900.01
MATLTVPPVP PSPRDDALQL YRAFKGLGCD TSAVINLLAH RDATQRAYIQ QEYKTMYSEE LSKRLASELS GKLESAVLMW
LKDPAGRDAS IIRKSLVEIR SLEGATEVIC SRTPSQLQYL KQVYHSLFGV YLEHDIQANT SPGSDHQKLL LAYISTPRPE
GPEVNREIAQ KDAKVLYKAG EKKLGTDEKS FIHIFSERSA AHLAAVSAYY HDMYGHSLKK AIKNETSGLF ELALLTIVQC
AIHPGKYFAK VLHKAMKGLG TDDSTLIRVI VTRTEVDMQY IKAEYSKKHK KTLNDAVHSE TSGHYRAFLL SLLGPNI*