GBrowse Details

Vigan.11G221400.01

Basic Information:
Name: Vigan.11G221400.01
Multiple alignment
Variant Information
Position: Chr11:34771782..34774500 (+ strand)
Length: 2719
Functional Information:
Description: Similar to Ssu72-like family protein isoform 1. [XP_007010184.1, Theobroma cacao]
GO: Biological Process: mRNA processing (GO:0006397)
Cellular Component: nucleus (GO:0005634)
Molecular Function: phosphoprotein phosphatase activity (GO:0004721)
InterPro: RNA polymerase II subunit A (IPR006811)
Phosphotyrosine protein phosphatase I superfamily (IPR023485)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.56,16.47,11.34,18.45,11.06,9.90,8.42,12.19
Arabidopsis thaliana homolog: AT1G73820.1
Automatic updates:
Name: NM_001251141 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306388 (LOC100306388), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:34771782..34771955 (+ strand)
Length: 174
Type: five_prime_UTR
Position: Chr11:34771956..34772170 (+ strand)
Length: 215
Type: CDS
Position: Chr11:34773028..34773173 (+ strand)
Length: 146
Type: CDS
Position: Chr11:34773900..34774018 (+ strand)
Length: 119
Type: CDS
Position: Chr11:34774172..34774273 (+ strand)
Length: 102
Type: CDS
Position: Chr11:34774274..34774500 (+ strand)
Length: 227
Type: three_prime_UTR


>Vigan.11G221400.01
GATCGCAAAG GATAATATTT TTGTCCAGCG TATGTGCCCT AACTCCATTG CAGAGGGTCT GTTCTGTTCC TTGTTCTCCT
CTTCTCCTCA ATTCAGCATC TCAGTTTCAA CAGAGCATCA ACAGCGAGAA ACAAAGAAAG GAACCAAACC TCGAAAGAGA
AGAGAACATA AGAGATGAAG TTTCGGTACG CGATGGTGTG TTCTTCGAAC CAGAACAGGA GCATGGAGGC TCATTCCCTG
CTCAAGAAGC AGGGCTTCGA AGTGTCTTCT TACGGCACTG GTGCCCACGT GAAGCTCCCG GGTCCCTCGG TCAGGGAGCC
CAATGTCTAC GAATTCGGAA CCCCCTACAA GCATATGTAC GATGACCTAC GTAGAAAAGA CTCTGAACTC TATAGACGAA
ATGGAATCTT GGCAATGCTT AAAAGAAATG CAACAGTCAA GTTGGCACCT CAACGGTGGC AGGAAAATGC TGTTGATGGC
GTCTTTGACG TGGTATTGAC ATTTGAAGAA AAAGTGTTTG ATATGGTTAT TGAAGATCTC CATAATAGAG ATCAAGTTTT
ATTGAAAGCT GTGCTGGTAA TCAACTTAGA GGTAAAAGAT AACCACGACG AAGCAGCTGT GGGAGCTAAG CATACTTTGG
ATCTATGTCA GGAGATTGAA AAAGCAGAAT CATGGGAGGA ATCAATTGAC GAAATTATTG CTGGTTTTGA GAATAAGTAT
AGGAGGAAGC TTTTGTACAG TGTCTCCTTC TACTAGAATA TTGCAGGCTC CCTAGAAAAA GAACTGTTAC ACTAATGAAT
ATTTAATTAA GCATACCATG AACACCATTT TTGTAAATTT GACAACTGGT ATCATTTCAA ATGAAAACAG ATGTATTTAT
TGGCTGTTGT GCATTAAAAT TTAAGGATCA AACTACCTAA GAATAAAAGG ATCATGGACT TGTTTTGGTG AATTATTCCA
AAAGGTTATG GACTTGTTTT ACA

>Vigan.11G221400.01
ATGAAGTTTC GGTACGCGAT GGTGTGTTCT TCGAACCAGA ACAGGAGCAT GGAGGCTCAT TCCCTGCTCA AGAAGCAGGG
CTTCGAAGTG TCTTCTTACG GCACTGGTGC CCACGTGAAG CTCCCGGGTC CCTCGGTCAG GGAGCCCAAT GTCTACGAAT
TCGGAACCCC CTACAAGCAT ATGTACGATG ACCTACGTAG AAAAGACTCT GAACTCTATA GACGAAATGG AATCTTGGCA
ATGCTTAAAA GAAATGCAAC AGTCAAGTTG GCACCTCAAC GGTGGCAGGA AAATGCTGTT GATGGCGTCT TTGACGTGGT
ATTGACATTT GAAGAAAAAG TGTTTGATAT GGTTATTGAA GATCTCCATA ATAGAGATCA AGTTTTATTG AAAGCTGTGC
TGGTAATCAA CTTAGAGGTA AAAGATAACC ACGACGAAGC AGCTGTGGGA GCTAAGCATA CTTTGGATCT ATGTCAGGAG
ATTGAAAAAG CAGAATCATG GGAGGAATCA ATTGACGAAA TTATTGCTGG TTTTGAGAAT AAGTATAGGA GGAAGCTTTT
GTACAGTGTC TCCTTCTACT AG

>Vigan.11G221400.01
MKFRYAMVCS SNQNRSMEAH SLLKKQGFEV SSYGTGAHVK LPGPSVREPN VYEFGTPYKH MYDDLRRKDS ELYRRNGILA
MLKRNATVKL APQRWQENAV DGVFDVVLTF EEKVFDMVIE DLHNRDQVLL KAVLVINLEV KDNHDEAAVG AKHTLDLCQE
IEKAESWEES IDEIIAGFEN KYRRKLLYSV SFY*