VIGGS:GBrowse

Vigan.11G222200.01

Basic Information:

Name:	Vigan.11G222200.01 Multiple alignment Variant Information
Position:	Chr11:34833246..34837946 (- strand)
Length:	4701

Functional Information:

Description:	Similar to Uncharacterized protein. [C6TKV3, Glycine max]
GO:	Biological Process: UMP biosynthetic process (GO:0006222)
	Biological Process: oxidation-reduction process (GO:0055114)
	Cellular Component: cytoplasm (GO:0005737)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: dihydroorotate dehydrogenase activity (GO:0004152)
	Molecular Function: dihydroorotate oxidase activity (GO:0004158)
InterPro:	Dihydroorotate dehydrogenase domain (IPR005720)
	Dihydroorotate dehydrogenase, class 1/ 2 (IPR012135)
	Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:75.89,40.93,65.78,50.34,63.49,49.22,35.16,28.00
Arabidopsis thaliana homolog:	AT3G17810.1

Automatic updates:

Name:	NM_001252829 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max NAD-dependent dihydropyrimidine dehydrogenase subunit PreA-like (LOC100804632), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:34833246..34833572 (- strand)
Length:	327
Type:	three_prime_UTR

Position:	Chr11:34833573..34833729 (- strand)
Length:	157
Type:	CDS

Position:	Chr11:34833848..34833957 (- strand)
Length:	110
Type:	CDS

Position:	Chr11:34834372..34834558 (- strand)
Length:	187
Type:	CDS

Position:	Chr11:34834648..34834760 (- strand)
Length:	113
Type:	CDS

Position:	Chr11:34835261..34835431 (- strand)
Length:	171
Type:	CDS

Position:	Chr11:34835524..34835787 (- strand)
Length:	264
Type:	CDS

Position:	Chr11:34837275..34837550 (- strand)
Length:	276
Type:	CDS

Position:	Chr11:34837551..34837946 (- strand)
Length:	396
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.11G222200.01
GTAACTTTTT CCCATGCAGA AAGAATATCC ATCCATGTTC CTTCCCCACA AAATCAATGA ATCCAAACTA CAGTGTTATT
AGTTTTATGC AATATATAAT ATTTTGCTAA CAAAATTTTC CCCCAAAATC CTTATAATAT TCTTTCACAG TCATTCTCAC
ATGTTAGTCC AATTCTATGA AGGAATTGAA TATGGTTTCT CCCAAACTTA TCCGATACAA TAAACCAAAT GCTAGAAACG
AAACAAGAGA TTCATAATTG CACGTTCTCT TTTGTTGTCT CCAGCTCATA GAATATCATA TCAGATTCAG AATTTCAGAT
TCTCCCTTTA TTCTTCCTAT TCATCACCTT CTCCTTCCCC GAGCTGCTGT AGAAAGTTGT GATTTTTACT TTACAGATGG
CATCTTTGAG CATGACCCAG ATCAGAGCTG GGAATTGGGC ATCTGGGTTT GGCTTGAATC GGGCTGGGAA GGTTCAGGTT
GGTCCCAGCA GCAGAGTTGG ATTTAAGGTG TTTGCTTCAG AGACTCAGGC TACAGAGCCT GATCTTAGCG TCACTGTCAA
TGGGTTGCAC ATGCCCAACC CCTTTGTTAT TGGGTCAGGT CCTCCAGGAA CCAATTACAC TGTCATGAAG AGGGCCTTTG
ATGAAGGTTG GGGTGCTGTG ATTGCCAAAA CTGTCTCACT TGATGCAGCA AAAGTTATAA ATGTAACTCC TAGATATGCC
CGTTTACGGG CAGGTGCAAA TGGCTCTGCA AAAGGAGAAA TTATTGGGTG GGAGAACATA GAACTTATCA GTGATAGGCC
ACTTGAAACC ATGTTGAAAG AATTCAAGCA ATTGAAAGAA GAGTATCCAG ACAGAATTCT GATTGCTTCA ATCATGGAGG
AGTACAATAA GGCTGCTTGG GAGGAGCTTA TCGATCGAGT CGAGCAAACT GGAGTTGATG CAATCGAAAT AAATTTCTCA
TGTCCTCACG GTATGCCAGA ACGCAAAATG GGTGCTGCTG TTGGCCAAGA TTGTGCTCTT CTGGAAGAGG TTTGTGGATG
GATAAATGCT AAAGCCACAA TTCCTGTTTG GGCTAAGATG ACTCCCAATA TAACTGATAT TTCACAGCCA GCAAGGGTTT
CTCTAAGTTC AGGATGTGAG GGAGTATCTG CCATAAATAC AATCATGAGT GTCATGGGAA TCAATCTCAA TACATTACGT
CCAGAGCCTT GTGTTGAGGG GTACTCAACT CCTGGGGGGT ATTCTGCAAA GGCAGTCCAT CCCATAGCAC TTGGGAAGGT
GATGACAATT GCAAAGATGA TGAAGTCAGA GTTTGACAGT GAGAACTATT CACTTTCTGC CATTGGTGGT GTTGAGACAG
GCGGAGATGC AGCTGAATTT ATTCTTCTTG GGGCAAACAC TGTTCAGGTG TGCACTGGGG TTATGATGCA TGGCTATGGT
CTTGTGAAGA AACTATGTCT TGAGCTTAAA GACTTCATGA AAAAGCACAA TTTCACAACA ATAGAAAACT TCAGAGGGGT
TTCTCTTGAG TACTTTACTA CTCACACTGA GTTGGTGAGA AGGCAGCAAG AAGCAATTCA GAAGAGGAAA GCCATAAAGA
AAGGCTTGCA ATCTGACAAA GACTGGACTG GAGATGGTTT TGTGAACGAA AGTGAAAGTA TGGTATCTAA CTGAAATCTT
CAGCCAAATC AAGCATCATG CAACCTTTCT TTTACAATTT TTCATTATCA TGCAAATGAG GAGGTGAAGC ACATTATCCT
TTGTTATTAA TCATGGATAT TTATCTTTCC AAGAACATTA GAATGTATTA TGTCAGAAAA TAAAGGAAGT ATTTTTAACA
AAATTCTGGG AAGATTATCA TAAACCTTTA CTTGGGTCAG CATTCTCTTG CCAACATACA TTATCTTTAT GTTACTTTGG
TATACTCTAA TAGAATGAAG TGCTAAAAAA TAGCTGTCCA CTTTTAATAT TGACTGTGAC ATGAGAAAAT ATAATCTGGC
T

[show][hide][copy]CDS

>Vigan.11G222200.01
ATGGCATCTT TGAGCATGAC CCAGATCAGA GCTGGGAATT GGGCATCTGG GTTTGGCTTG AATCGGGCTG GGAAGGTTCA
GGTTGGTCCC AGCAGCAGAG TTGGATTTAA GGTGTTTGCT TCAGAGACTC AGGCTACAGA GCCTGATCTT AGCGTCACTG
TCAATGGGTT GCACATGCCC AACCCCTTTG TTATTGGGTC AGGTCCTCCA GGAACCAATT ACACTGTCAT GAAGAGGGCC
TTTGATGAAG GTTGGGGTGC TGTGATTGCC AAAACTGTCT CACTTGATGC AGCAAAAGTT ATAAATGTAA CTCCTAGATA
TGCCCGTTTA CGGGCAGGTG CAAATGGCTC TGCAAAAGGA GAAATTATTG GGTGGGAGAA CATAGAACTT ATCAGTGATA
GGCCACTTGA AACCATGTTG AAAGAATTCA AGCAATTGAA AGAAGAGTAT CCAGACAGAA TTCTGATTGC TTCAATCATG
GAGGAGTACA ATAAGGCTGC TTGGGAGGAG CTTATCGATC GAGTCGAGCA AACTGGAGTT GATGCAATCG AAATAAATTT
CTCATGTCCT CACGGTATGC CAGAACGCAA AATGGGTGCT GCTGTTGGCC AAGATTGTGC TCTTCTGGAA GAGGTTTGTG
GATGGATAAA TGCTAAAGCC ACAATTCCTG TTTGGGCTAA GATGACTCCC AATATAACTG ATATTTCACA GCCAGCAAGG
GTTTCTCTAA GTTCAGGATG TGAGGGAGTA TCTGCCATAA ATACAATCAT GAGTGTCATG GGAATCAATC TCAATACATT
ACGTCCAGAG CCTTGTGTTG AGGGGTACTC AACTCCTGGG GGGTATTCTG CAAAGGCAGT CCATCCCATA GCACTTGGGA
AGGTGATGAC AATTGCAAAG ATGATGAAGT CAGAGTTTGA CAGTGAGAAC TATTCACTTT CTGCCATTGG TGGTGTTGAG
ACAGGCGGAG ATGCAGCTGA ATTTATTCTT CTTGGGGCAA ACACTGTTCA GGTGTGCACT GGGGTTATGA TGCATGGCTA
TGGTCTTGTG AAGAAACTAT GTCTTGAGCT TAAAGACTTC ATGAAAAAGC ACAATTTCAC AACAATAGAA AACTTCAGAG
GGGTTTCTCT TGAGTACTTT ACTACTCACA CTGAGTTGGT GAGAAGGCAG CAAGAAGCAA TTCAGAAGAG GAAAGCCATA
AAGAAAGGCT TGCAATCTGA CAAAGACTGG ACTGGAGATG GTTTTGTGAA CGAAAGTGAA AGTATGGTAT CTAACTGA

[show][hide][copy]PROTEIN

>Vigan.11G222200.01
MASLSMTQIR AGNWASGFGL NRAGKVQVGP SSRVGFKVFA SETQATEPDL SVTVNGLHMP NPFVIGSGPP GTNYTVMKRA
FDEGWGAVIA KTVSLDAAKV INVTPRYARL RAGANGSAKG EIIGWENIEL ISDRPLETML KEFKQLKEEY PDRILIASIM
EEYNKAAWEE LIDRVEQTGV DAIEINFSCP HGMPERKMGA AVGQDCALLE EVCGWINAKA TIPVWAKMTP NITDISQPAR
VSLSSGCEGV SAINTIMSVM GINLNTLRPE PCVEGYSTPG GYSAKAVHPI ALGKVMTIAK MMKSEFDSEN YSLSAIGGVE
TGGDAAEFIL LGANTVQVCT GVMMHGYGLV KKLCLELKDF MKKHNFTTIE NFRGVSLEYF TTHTELVRRQ QEAIQKRKAI
KKGLQSDKDW TGDGFVNESE SMVSN*