GBrowse Details

Vigan.11G222900.01

Basic Information:
Name: Vigan.11G222900.01
Multiple alignment
Variant Information
Position: Chr11:34927290..34932059 (+ strand)
Length: 4770
Functional Information:
Description: Similar to Glutamine synthetase PR-2. [P04771, Phaseolus vulgaris]
GO: Biological Process: glutamine biosynthetic process (GO:0006542)
Biological Process: nitrogen compound metabolic process (GO:0006807)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate-ammonia ligase activity (GO:0004356)
InterPro: Glutamine synthetase, catalytic domain (IPR008146)
Glutamine synthetase, beta-Grasp (IPR008147)
Glutamine synthetase/guanido kinase, catalytic domain (IPR014746)
Glutamine synthetase, N-terminal conserved site (IPR027302)
Glutamine synthetase, glycine-rich site (IPR027303)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1355.17,312.84,33.49,23.07,75.58,171.55,49.12,59.22
Arabidopsis thaliana homolog: AT1G48470.1, AT1G66200.3, AT3G17820.1, AT5G16570.1, AT5G35630.1, AT5G37600.1
Automatic updates:
Name: NM_001252892 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytosolic glutamine synthetase alpha (GS1alpha), mRNA.
PubMed ID: 11788764 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:34927290..34927509 (+ strand)
Length: 220
Type: five_prime_UTR
Position: Chr11:34927510..34927583 (+ strand)
Length: 74
Type: CDS
Position: Chr11:34927913..34927952 (+ strand)
Length: 40
Type: CDS
Position: Chr11:34928081..34928184 (+ strand)
Length: 104
Type: CDS
Position: Chr11:34928274..34928322 (+ strand)
Length: 49
Type: CDS
Position: Chr11:34928446..34928552 (+ strand)
Length: 107
Type: CDS
Position: Chr11:34928696..34928783 (+ strand)
Length: 88
Type: CDS
Position: Chr11:34930579..34930707 (+ strand)
Length: 129
Type: CDS
Position: Chr11:34930898..34930972 (+ strand)
Length: 75
Type: CDS
Position: Chr11:34931076..34931129 (+ strand)
Length: 54
Type: CDS
Position: Chr11:34931264..34931301 (+ strand)
Length: 38
Type: CDS
Position: Chr11:34931508..34931667 (+ strand)
Length: 160
Type: CDS
Position: Chr11:34931743..34931895 (+ strand)
Length: 153
Type: CDS
Position: Chr11:34931896..34932059 (+ strand)
Length: 164
Type: three_prime_UTR

>Vigan.11G222900.01 class=Sequence position=Chr11:34927290..34932059 (+ strand)
CAACCTCTTG GAAGAAAAAG GGTCTCCAAG CACATTCAAA CACGTCTATG CAACAAGAAT CTTAGGTTTA TTCTTAACAT
CAGTGACTCA TTATTATAGT TATTTATAAA GAGACTCTAA CTCCAAACAG AGTCCTTCAT TCACTTCACC CTATCAAAGC
TTCACCTTTT GGTATCTTCT ACAATATCCT TTCATAGTCA TCTTTTTCTT CTTTATCACC ATGTCTTTGC TTTCAGATCT
CATCAACCTC AACCTCTCAG AATCCACAGA AAAGATCATT GCTGAGTACA TATGGTGAGC CTCTGTCTCA AACACCACAA
AAAATGAACT ATCATATCAC CTGAGCCATG TGCAAGAAAC AGGGGACTCT GTTTTTTCTT TTTCCTTTTT AAATCTATGA
ACAAATGGTG TTATTGTTAC ACTAATGTAA TAATCAACCA ACCCCTTTTG TGGTATGTTT TATGTTGAGT ACTACTTCCT
TTCCCATGTT GTTCCATCAA ACACAAATAA GAAAAAGATG GTTTTTTGTA ATAGATGATG CTAGAATCTT GTTCTTGGGT
TTGATCTAGT TGATGATGTA GCGAAGGAGA GTTGTTTAAT TATTTATGTA TGATTTTAAA CAGGGTTGGT GGATCTGGTA
TGGACCTCAG AAGTAAAGCC AGAGTAATTG GTTTTTTCTT TTTCTTTTTC TTCATCTCAA GTGATAATTA ATAAATTAAT
TTGGTAAACT TTTCCATGTT CACTATTTTA AATTTGTGAC CTTTTTGTTG TTGTGGTTTG TGAACAAACA GACTCTTCCT
GGACCAGTGG ATGACCCTGC AAAACTTCCA AAATGGAACT ATGATGGGTC TAGCACAGAT CAAGCTCCTG GGGATGATAG
TGAAGTCATC TTATAGTATG ATTTAATCCC CTTATGGAAT TTTATGTATT TAATGATATT CTTTTTCATA AAATAATTGA
TGGTTGGTGT TTTCTTTGAT GAAGTCCACA AGCTATTTTC AAGGACCCCT TTAGGAGAGG CAACAATATT CTTGTAAGTT
TTCAAATTTG AACAATTGGC TTATAATAAT AATAAAGCAA GAACTTTTTT TTCTTGGTTA ATCAAATTGT ATACTTTTTT
GTGGGTCAAT GTTTCACACT TGAATAAAAT CTATAGGTGA TTTGTGATGT TTACACCCCA GCTGGTGAGC CGCTTCAAAC
CAACAAGAGG TATGATGCTG CCAAAATTTT TAGCCACCCT GATGTTGTTG CTGAGGTACC ATGGTAAGTA TTTTTTCCAA
CATTTTATTT AGATTATTCA ATTTTTCAAC AAATAATTAG TTTCTATAAA AAAAACACTT TTTTATTCTA CTTTTTTTAA
ATGAAATTAT TATGATTTAC CCTTTCATGA ATATATACAT TCACAGGTAT GGAATTGAAC AAGAATACAC CTTATTGCAG
AAAGATGTGA ATTGGCCACT TGGGTGGCCA CTTGGTGGAT TTCCTGGACC ACAGGTATGA AATGTTCCCT TCAATAACAT
AGTACCATTT AATCACAAAC ATTAATATAT TGTAATTTAA TTTCAGGATA ATCACTTCCC TTTAAGATGT TATTTTAAGT
CTTACGGATA AGATCAATTT ATAATATATT GGATACAAAT CATATCTGGT TTTGTAGGAT TGAGTTAAGT TTAAAATTTA
GATTTTAATA CGATTATTCT TTCGAGAATT TTTTTTTTGT GGCCTATATT TGTCGATGTC GTCAATGACA CCATTGTTTA
CCACTACTAG AGTTTCAGTT TCGACTGAAG ATCATCGTGT CGTCAACAAT GCCTTAATAG AAATTCTTAC GCGCTTTCAA
TGTCTTTTGA AGTTGTGATT GTGCGTGAGT GCACGTTCGG TCTCTTCTTA AGAAGCTATT CGAGCATTAA GATTACTTTT
TTTCCTCTTT CAAGTGTCTT GATTGAAGAA TCTTGAAGTT TTAAGGTTTT TTTCTCCTGT TCGTCCATCA CTTCTTCAAC
TGCTGTCTAT TATAACCTTT CTTTTGTTAC CATTGTGTTT GACTCATTCA TATATACTTT ATCTCCCGTG ATAAAAATAG
TTTTTGTTAG TTTATTTATA ATAGTTGTGA CTCTTCAACA ATGATCTTTT TATTCACTAA ATGTCAACAA TGCATTCTTC
AACCGTGATT TGTAAGAAAA TATTTATATG GAGCAACTTC CCAGTTTTGT TGTTCAGGGG AGTTTTCAGG GTCAATATTT
CGTTTTCTAT GTCGTCTTCG CAAATTATTA ACGATTTGGT GTAATTCAAG TGCAGAAGCA TATATTTTCA CTCTGTCTTT
ATTGATTATA TTAGTAACAA ATTTGACACA TATGATTTAT ATGCACCATC TTCAAGGGAT TGGAAGTATT AGATATATTA
TCTTTATTTC ATTTTTATTT TTTATCTTTA GTTAGTTTGT TATTATTTCT TACTTGTATT TTAGATTTAG CTCACATTTC
TTCTATTATG GATAGAGGAC ACATGAGAGA TTAATCTCAT ACATAGTTTT TATATGGGTT AAAATTCTAT CCTAACGAGA
TTTGTGTTTA TTGAGTATAT CATTTTACCT GGTATCAAAT CACTATTGGA ATTAATGTCT AGTCCTATGC TCAAGATCTA
TATATCTCAA CTTAAGGAGG TATATTGAAG TCTCACATTG ACTATATATA AGACCAGTTT ATAAGTTGAG TTAAGCTTAA
AGTCTATCTC TTCACACTTT TTAACTAGTA TTTCACTTTA CGCTAGATCT ATTTTCTTTT TTCATTTTCA AGGAGTGTTT
TTTATGTTAC CATTGTTTTG TGTAACTTTC ACAAATTTGG TTGTACTATA TATTGTAATA ATTGAAACTC AATGATTGAT
TTCATACACG CCTTTGTCTT ATTGTTTGCA TTAGATATTT TTGGTTGGTT TTTCTTGTCA CACAATTACT TTGAACAAAG
ACAAAAGTCA TAAAACTTTT ATTCTTAAAA AAGAAAATCC TATTTGTATT TTCTTTTCTT ATTCATATTC ACTTAATTTT
TTTTAATTTC TTTTTGTCAA ATTTGCTCTT CAAGTTGTTT ATGATCACTG CATTTGATGT TATAAATCAA AGTCAAATAA
TGTGAATTGG TTCTTTGTCA AAATATGCGA AAATGTCTCA ATTGTTGTGC ATGAACAATG GGTAAAATTA ATGTTAATGA
AAAATAATCA ATTATTGTTT GAATTAATCT ATTCATTTCT CTTCTCTTTT CTTCTTAATG CTAACTCAAT CAATGTTTAA
CTTGAACAGG GACCATACTA CTGTGGAGTT GGTGCTGACA AAGCCTATGG TCGTGATATT GTAGATGCAC ATTACAAAGC
TTGTGTTTAT GCAGGAATTA ACATTAGTGG CATCAATGGA GAGGTTATGC CAGGCCAGGT ACAATCAGAA ATTTAAATAC
TTAAATGGTA GTGACTGATA ATAGTGTTAT CAAAGCATTT CCATGGTGTG ATTTAATGAA CAAACTTATC TTCTTTGGAA
AACTAATGAG TCTTCTATTT ATTACTACAA TGTAATTGAC TTTTATTGAA AATTAAAAAT ATTTATTAAT TTTATGCTTA
TTTTGTAGTG GGAATTCCAA ATTGGTCCTT CTGTTGGAAT CTCTGCTGGA GATGAAGTCT GGGCTGCTCG CTACACTTTG
GAGGTAATAC AAAGTTTCAC TAATTTTTTA TTATTAAATA TCATATATGA TGAACATGAT TGATGAAAAT GAATGAAAAC
GTTGATGAAA TGTTGTTATG CTACAGAGGA TTACAGAGTT GGCAGGAGCT GTTGTTTCAT TTGATCCCAA GCCTATTCCG
GTTAGATATT TTTCTTGTAA AACTGTTGAT AACTTGGTAG AAAGATTGAA TCATATAATA AAAGAATAAT TCACCTTAAT
TGTATCATTG ATTTATTTCA ATATTTTGAC TTTATTTCAT GGTTGTGGTA TTAGGGAGAT TGGAATGGAG CTGGGGCACA
TACAAACTAC AGGTAATATA TGAATCTGGA TTTTTTACAA AGTTTTTTGT GCTATTTTTC TGCTGTATCT TCAAAATATA
TTAATATATC AAAATCAGTA TATTTTTAAA GTTATCGTAG AAGAACAACA CCAAAAACTT ATAAACATGT TATATATTTG
AGTTATTATT GTTTGAAATA TATGATTTTC TGAGAGATGT AATGAATGGT GAGTACAGCA CCAAGTCCAT GAGAGAAGAG
GGTGGTTATG AGGTGATTAA GAAAGCCATT GAAAAGCTTG GATTGAGACA CAAAGAGCAC ATTGCAGCAT ATGGAAAAGG
TAATGAGAGA CGTCTAACTG GAAGACATGA AACTGCAGAC ATCAACACCT TCTCTTGGGT AAGTCATCAT CCTTTGGTAT
CTTATGATGT TTTATGAGAT TAGCAATTAA CGGTGTGACA TTTTTGTCTG AAGGGTGTGG CAAACCGTGG AAGCTCAGTT
AGAGTTGGAA GAGACACTGA GAAACAAGGG AAAGGTTACT TTGAGGACAG AAGGCCTGCT TCTAACATGG ATCCTTATGT
TGTCACCTCC ATGATTGCAG AGACCACCAT CCTCTGGAAA CCATGAACTC GTGTTTAGAC CACTCAAAGT TGTGTTTTCA
ATACCATTTG ATCCACAATT TAGTTGTCTC CAAGGAATTG TTGGTTTTTG AGGTCTTTTA AGCCTTCCTG TGTCCTCTGT
ATGTTTGACA ATGACTTCAC CACTAATAAC AGAATTGATT CTTAAGTTCA 

>Vigan.11G222900.01
CAACCTCTTG GAAGAAAAAG GGTCTCCAAG CACATTCAAA CACGTCTATG CAACAAGAAT CTTAGGTTTA TTCTTAACAT
CAGTGACTCA TTATTATAGT TATTTATAAA GAGACTCTAA CTCCAAACAG AGTCCTTCAT TCACTTCACC CTATCAAAGC
TTCACCTTTT GGTATCTTCT ACAATATCCT TTCATAGTCA TCTTTTTCTT CTTTATCACC ATGTCTTTGC TTTCAGATCT
CATCAACCTC AACCTCTCAG AATCCACAGA AAAGATCATT GCTGAGTACA TATGGGTTGG TGGATCTGGT ATGGACCTCA
GAAGTAAAGC CAGAACTCTT CCTGGACCAG TGGATGACCC TGCAAAACTT CCAAAATGGA ACTATGATGG GTCTAGCACA
GATCAAGCTC CTGGGGATGA TAGTGAAGTC ATCTTATATC CACAAGCTAT TTTCAAGGAC CCCTTTAGGA GAGGCAACAA
TATTCTTGTG ATTTGTGATG TTTACACCCC AGCTGGTGAG CCGCTTCAAA CCAACAAGAG GTATGATGCT GCCAAAATTT
TTAGCCACCC TGATGTTGTT GCTGAGGTAC CATGGTATGG AATTGAACAA GAATACACCT TATTGCAGAA AGATGTGAAT
TGGCCACTTG GGTGGCCACT TGGTGGATTT CCTGGACCAC AGGGACCATA CTACTGTGGA GTTGGTGCTG ACAAAGCCTA
TGGTCGTGAT ATTGTAGATG CACATTACAA AGCTTGTGTT TATGCAGGAA TTAACATTAG TGGCATCAAT GGAGAGGTTA
TGCCAGGCCA GTGGGAATTC CAAATTGGTC CTTCTGTTGG AATCTCTGCT GGAGATGAAG TCTGGGCTGC TCGCTACACT
TTGGAGAGGA TTACAGAGTT GGCAGGAGCT GTTGTTTCAT TTGATCCCAA GCCTATTCCG GGAGATTGGA ATGGAGCTGG
GGCACATACA AACTACAGCA CCAAGTCCAT GAGAGAAGAG GGTGGTTATG AGGTGATTAA GAAAGCCATT GAAAAGCTTG
GATTGAGACA CAAAGAGCAC ATTGCAGCAT ATGGAAAAGG TAATGAGAGA CGTCTAACTG GAAGACATGA AACTGCAGAC
ATCAACACCT TCTCTTGGGG TGTGGCAAAC CGTGGAAGCT CAGTTAGAGT TGGAAGAGAC ACTGAGAAAC AAGGGAAAGG
TTACTTTGAG GACAGAAGGC CTGCTTCTAA CATGGATCCT TATGTTGTCA CCTCCATGAT TGCAGAGACC ACCATCCTCT
GGAAACCATG AACTCGTGTT TAGACCACTC AAAGTTGTGT TTTCAATACC ATTTGATCCA CAATTTAGTT GTCTCCAAGG
AATTGTTGGT TTTTGAGGTC TTTTAAGCCT TCCTGTGTCC TCTGTATGTT TGACAATGAC TTCACCACTA ATAACAGAAT
TGATTCTTAA GTTCA

>Vigan.11G222900.01
ATGTCTTTGC TTTCAGATCT CATCAACCTC AACCTCTCAG AATCCACAGA AAAGATCATT GCTGAGTACA TATGGGTTGG
TGGATCTGGT ATGGACCTCA GAAGTAAAGC CAGAACTCTT CCTGGACCAG TGGATGACCC TGCAAAACTT CCAAAATGGA
ACTATGATGG GTCTAGCACA GATCAAGCTC CTGGGGATGA TAGTGAAGTC ATCTTATATC CACAAGCTAT TTTCAAGGAC
CCCTTTAGGA GAGGCAACAA TATTCTTGTG ATTTGTGATG TTTACACCCC AGCTGGTGAG CCGCTTCAAA CCAACAAGAG
GTATGATGCT GCCAAAATTT TTAGCCACCC TGATGTTGTT GCTGAGGTAC CATGGTATGG AATTGAACAA GAATACACCT
TATTGCAGAA AGATGTGAAT TGGCCACTTG GGTGGCCACT TGGTGGATTT CCTGGACCAC AGGGACCATA CTACTGTGGA
GTTGGTGCTG ACAAAGCCTA TGGTCGTGAT ATTGTAGATG CACATTACAA AGCTTGTGTT TATGCAGGAA TTAACATTAG
TGGCATCAAT GGAGAGGTTA TGCCAGGCCA GTGGGAATTC CAAATTGGTC CTTCTGTTGG AATCTCTGCT GGAGATGAAG
TCTGGGCTGC TCGCTACACT TTGGAGAGGA TTACAGAGTT GGCAGGAGCT GTTGTTTCAT TTGATCCCAA GCCTATTCCG
GGAGATTGGA ATGGAGCTGG GGCACATACA AACTACAGCA CCAAGTCCAT GAGAGAAGAG GGTGGTTATG AGGTGATTAA
GAAAGCCATT GAAAAGCTTG GATTGAGACA CAAAGAGCAC ATTGCAGCAT ATGGAAAAGG TAATGAGAGA CGTCTAACTG
GAAGACATGA AACTGCAGAC ATCAACACCT TCTCTTGGGG TGTGGCAAAC CGTGGAAGCT CAGTTAGAGT TGGAAGAGAC
ACTGAGAAAC AAGGGAAAGG TTACTTTGAG GACAGAAGGC CTGCTTCTAA CATGGATCCT TATGTTGTCA CCTCCATGAT
TGCAGAGACC ACCATCCTCT GGAAACCATG A

>Vigan.11G222900.01
MSLLSDLINL NLSESTEKII AEYIWVGGSG MDLRSKARTL PGPVDDPAKL PKWNYDGSST DQAPGDDSEV ILYPQAIFKD
PFRRGNNILV ICDVYTPAGE PLQTNKRYDA AKIFSHPDVV AEVPWYGIEQ EYTLLQKDVN WPLGWPLGGF PGPQGPYYCG
VGADKAYGRD IVDAHYKACV YAGINISGIN GEVMPGQWEF QIGPSVGISA GDEVWAARYT LERITELAGA VVSFDPKPIP
GDWNGAGAHT NYSTKSMREE GGYEVIKKAI EKLGLRHKEH IAAYGKGNER RLTGRHETAD INTFSWGVAN RGSSVRVGRD
TEKQGKGYFE DRRPASNMDP YVVTSMIAET TILWKP*