GBrowse Details

Vigan.11G222900.01

Basic Information:
Name: Vigan.11G222900.01
Multiple alignment
Variant Information
Position: Chr11:34927290..34932059 (+ strand)
Length: 4770
Functional Information:
Description: Similar to Glutamine synthetase PR-2. [P04771, Phaseolus vulgaris]
GO: Biological Process: glutamine biosynthetic process (GO:0006542)
Biological Process: nitrogen compound metabolic process (GO:0006807)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate-ammonia ligase activity (GO:0004356)
InterPro: Glutamine synthetase, catalytic domain (IPR008146)
Glutamine synthetase, beta-Grasp (IPR008147)
Glutamine synthetase/guanido kinase, catalytic domain (IPR014746)
Glutamine synthetase, N-terminal conserved site (IPR027302)
Glutamine synthetase, glycine-rich site (IPR027303)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1355.17,312.84,33.49,23.07,75.58,171.55,49.12,59.22
Arabidopsis thaliana homolog: AT1G48470.1, AT1G66200.3, AT3G17820.1, AT5G16570.1, AT5G35630.1, AT5G37600.1
Automatic updates:
Name: NM_001252892 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytosolic glutamine synthetase alpha (GS1alpha), mRNA.
PubMed ID: 11788764 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:34927290..34927509 (+ strand)
Length: 220
Type: five_prime_UTR
Position: Chr11:34927510..34927583 (+ strand)
Length: 74
Type: CDS
Position: Chr11:34927913..34927952 (+ strand)
Length: 40
Type: CDS
Position: Chr11:34928081..34928184 (+ strand)
Length: 104
Type: CDS
Position: Chr11:34928274..34928322 (+ strand)
Length: 49
Type: CDS
Position: Chr11:34928446..34928552 (+ strand)
Length: 107
Type: CDS
Position: Chr11:34928696..34928783 (+ strand)
Length: 88
Type: CDS
Position: Chr11:34930579..34930707 (+ strand)
Length: 129
Type: CDS
Position: Chr11:34930898..34930972 (+ strand)
Length: 75
Type: CDS
Position: Chr11:34931076..34931129 (+ strand)
Length: 54
Type: CDS
Position: Chr11:34931264..34931301 (+ strand)
Length: 38
Type: CDS
Position: Chr11:34931508..34931667 (+ strand)
Length: 160
Type: CDS
Position: Chr11:34931743..34931895 (+ strand)
Length: 153
Type: CDS
Position: Chr11:34931896..34932059 (+ strand)
Length: 164
Type: three_prime_UTR


>Vigan.11G222900.01
CAACCTCTTG GAAGAAAAAG GGTCTCCAAG CACATTCAAA CACGTCTATG CAACAAGAAT CTTAGGTTTA TTCTTAACAT
CAGTGACTCA TTATTATAGT TATTTATAAA GAGACTCTAA CTCCAAACAG AGTCCTTCAT TCACTTCACC CTATCAAAGC
TTCACCTTTT GGTATCTTCT ACAATATCCT TTCATAGTCA TCTTTTTCTT CTTTATCACC ATGTCTTTGC TTTCAGATCT
CATCAACCTC AACCTCTCAG AATCCACAGA AAAGATCATT GCTGAGTACA TATGGGTTGG TGGATCTGGT ATGGACCTCA
GAAGTAAAGC CAGAACTCTT CCTGGACCAG TGGATGACCC TGCAAAACTT CCAAAATGGA ACTATGATGG GTCTAGCACA
GATCAAGCTC CTGGGGATGA TAGTGAAGTC ATCTTATATC CACAAGCTAT TTTCAAGGAC CCCTTTAGGA GAGGCAACAA
TATTCTTGTG ATTTGTGATG TTTACACCCC AGCTGGTGAG CCGCTTCAAA CCAACAAGAG GTATGATGCT GCCAAAATTT
TTAGCCACCC TGATGTTGTT GCTGAGGTAC CATGGTATGG AATTGAACAA GAATACACCT TATTGCAGAA AGATGTGAAT
TGGCCACTTG GGTGGCCACT TGGTGGATTT CCTGGACCAC AGGGACCATA CTACTGTGGA GTTGGTGCTG ACAAAGCCTA
TGGTCGTGAT ATTGTAGATG CACATTACAA AGCTTGTGTT TATGCAGGAA TTAACATTAG TGGCATCAAT GGAGAGGTTA
TGCCAGGCCA GTGGGAATTC CAAATTGGTC CTTCTGTTGG AATCTCTGCT GGAGATGAAG TCTGGGCTGC TCGCTACACT
TTGGAGAGGA TTACAGAGTT GGCAGGAGCT GTTGTTTCAT TTGATCCCAA GCCTATTCCG GGAGATTGGA ATGGAGCTGG
GGCACATACA AACTACAGCA CCAAGTCCAT GAGAGAAGAG GGTGGTTATG AGGTGATTAA GAAAGCCATT GAAAAGCTTG
GATTGAGACA CAAAGAGCAC ATTGCAGCAT ATGGAAAAGG TAATGAGAGA CGTCTAACTG GAAGACATGA AACTGCAGAC
ATCAACACCT TCTCTTGGGG TGTGGCAAAC CGTGGAAGCT CAGTTAGAGT TGGAAGAGAC ACTGAGAAAC AAGGGAAAGG
TTACTTTGAG GACAGAAGGC CTGCTTCTAA CATGGATCCT TATGTTGTCA CCTCCATGAT TGCAGAGACC ACCATCCTCT
GGAAACCATG AACTCGTGTT TAGACCACTC AAAGTTGTGT TTTCAATACC ATTTGATCCA CAATTTAGTT GTCTCCAAGG
AATTGTTGGT TTTTGAGGTC TTTTAAGCCT TCCTGTGTCC TCTGTATGTT TGACAATGAC TTCACCACTA ATAACAGAAT
TGATTCTTAA GTTCA

>Vigan.11G222900.01
ATGTCTTTGC TTTCAGATCT CATCAACCTC AACCTCTCAG AATCCACAGA AAAGATCATT GCTGAGTACA TATGGGTTGG
TGGATCTGGT ATGGACCTCA GAAGTAAAGC CAGAACTCTT CCTGGACCAG TGGATGACCC TGCAAAACTT CCAAAATGGA
ACTATGATGG GTCTAGCACA GATCAAGCTC CTGGGGATGA TAGTGAAGTC ATCTTATATC CACAAGCTAT TTTCAAGGAC
CCCTTTAGGA GAGGCAACAA TATTCTTGTG ATTTGTGATG TTTACACCCC AGCTGGTGAG CCGCTTCAAA CCAACAAGAG
GTATGATGCT GCCAAAATTT TTAGCCACCC TGATGTTGTT GCTGAGGTAC CATGGTATGG AATTGAACAA GAATACACCT
TATTGCAGAA AGATGTGAAT TGGCCACTTG GGTGGCCACT TGGTGGATTT CCTGGACCAC AGGGACCATA CTACTGTGGA
GTTGGTGCTG ACAAAGCCTA TGGTCGTGAT ATTGTAGATG CACATTACAA AGCTTGTGTT TATGCAGGAA TTAACATTAG
TGGCATCAAT GGAGAGGTTA TGCCAGGCCA GTGGGAATTC CAAATTGGTC CTTCTGTTGG AATCTCTGCT GGAGATGAAG
TCTGGGCTGC TCGCTACACT TTGGAGAGGA TTACAGAGTT GGCAGGAGCT GTTGTTTCAT TTGATCCCAA GCCTATTCCG
GGAGATTGGA ATGGAGCTGG GGCACATACA AACTACAGCA CCAAGTCCAT GAGAGAAGAG GGTGGTTATG AGGTGATTAA
GAAAGCCATT GAAAAGCTTG GATTGAGACA CAAAGAGCAC ATTGCAGCAT ATGGAAAAGG TAATGAGAGA CGTCTAACTG
GAAGACATGA AACTGCAGAC ATCAACACCT TCTCTTGGGG TGTGGCAAAC CGTGGAAGCT CAGTTAGAGT TGGAAGAGAC
ACTGAGAAAC AAGGGAAAGG TTACTTTGAG GACAGAAGGC CTGCTTCTAA CATGGATCCT TATGTTGTCA CCTCCATGAT
TGCAGAGACC ACCATCCTCT GGAAACCATG A

>Vigan.11G222900.01
MSLLSDLINL NLSESTEKII AEYIWVGGSG MDLRSKARTL PGPVDDPAKL PKWNYDGSST DQAPGDDSEV ILYPQAIFKD
PFRRGNNILV ICDVYTPAGE PLQTNKRYDA AKIFSHPDVV AEVPWYGIEQ EYTLLQKDVN WPLGWPLGGF PGPQGPYYCG
VGADKAYGRD IVDAHYKACV YAGINISGIN GEVMPGQWEF QIGPSVGISA GDEVWAARYT LERITELAGA VVSFDPKPIP
GDWNGAGAHT NYSTKSMREE GGYEVIKKAI EKLGLRHKEH IAAYGKGNER RLTGRHETAD INTFSWGVAN RGSSVRVGRD
TEKQGKGYFE DRRPASNMDP YVVTSMIAET TILWKP*