GBrowse Details

Vigan.11G225100.01

Basic Information:
Name: Vigan.11G225100.01
Multiple alignment
Variant Information
Position: Chr11:35156543..35159551 (+ strand)
Length: 3009
Functional Information:
Description: Similar to Aldose 1-epimerase. [V7C5Y1, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: hexose metabolic process (GO:0019318)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: isomerase activity (GO:0016853)
Molecular Function: carbohydrate binding (GO:0030246)
InterPro: Aldose 1-/Glucose-6-phosphate 1-epimerase (IPR008183)
Galactose mutarotase-like domain (IPR011013)
Glycoside hydrolase-type carbohydrate-binding, subgroup (IPR014718)
Aldose 1-epimerase (IPR015443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.92,10.83,30.21,20.59,5.71,86.42,28.68,29.74
Arabidopsis thaliana homolog: AT3G17940.1
Automatic updates:
Name: NM_001255125 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aldose 1-epimerase-like (LOC100776238), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:35156543..35156622 (+ strand)
Length: 80
Type: five_prime_UTR
Position: Chr11:35156623..35156833 (+ strand)
Length: 211
Type: CDS
Position: Chr11:35156931..35156980 (+ strand)
Length: 50
Type: CDS
Position: Chr11:35157826..35157952 (+ strand)
Length: 127
Type: CDS
Position: Chr11:35158383..35158487 (+ strand)
Length: 105
Type: CDS
Position: Chr11:35158580..35159202 (+ strand)
Length: 623
Type: CDS
Position: Chr11:35159203..35159551 (+ strand)
Length: 349
Type: three_prime_UTR


>Vigan.11G225100.01
AGAGAAACAG GAAAATGTAA CAGTAGAATT TTGTAACAGC TGGTGAAACA TTGTTTGTTA TTATTACCTC GTAGCAGTTA
ATGTTATGTT GGATCTGTTC TTATATACGA GTTGTGTTAT TCAATCTGAT CACTTCAGTC ACCTTCATAC TCTTTTCCTC
TCTCTCTTCA ATTCCAATGG CGGATCAGAG CCCCAAACCA GAGACCTTCG AGCTCAGCAA TGGCAGCATG AAGATTCTCC
TCACCAATCT CGGATGCACC ATCATCTCCT TATCTGTTCC CGGAAAAGAT GGGGTGTTAT CCGACGTCGT TCTTGGCCTC
GACTCTGTTG AATCCTATGA GAAAGGTCTT TCTCCATATT TTGGCTGCAT TGTGGGTCGG GTTGCAAACC GAATCAAGGA
TGGCAAATTT ACACTTGATG GAGTTCAGTA CACTTTGCCT CTGAACAAAC CCCCAAACAG TCTCCATGGT GGAAATATTG
GGTTTGATAA GAGGGTATGG GAGGTAGTTG AACATAAAAA AGGAGAAACT CCTTCAATCA CTTTCAAGTA TCACAGTCAG
GATGGAGAAG AAGGTTATCC TGGGGATATC ACTGTTACAG CCACATACAC CCTCACCTCA AACACAACTC TGAGGCTTGA
CATGGAAGGA GTGCCAAAGG ACAAACCCAC CATAGTTAAC TTAGCTCAGC ACACCTACTG GAACTTAGCT GGTCACAACT
CAGGGAATGT ACTTGACCAT TCAATTCAGA TATGGGCTAA TAATATCACT CCTGTAGATG AGAATACTGT GCCAACAGGT
GAAATCATGG CAGTGAAGGG TACCCCTTTT GATTTTACAT CTGAGAAAAG AATAGGGAAC GATATTAGTG AAGTTGGATT
GGGATATGAC CACAATTTTG TGCTGGATTG TGGAGAAGAG AAAGATGGTT TGAGGCATGT TGCCAGAGTG AGGGATCCAT
CAAGTTCAAG AGTACTTAAC TTGTGGACAA CTGCCCCTGG TGTGCAATTT TACACTGGAA ACTATGTTAA TGGTGTTAAA
GGAAAAGGAG GTGCCATATA TGAAAAACAT GCAGGGTTAT GTCTGGAGAC ACAAGGATTC CCTAATGCTA TAAACCAACC
AAATTTTCCA TCTGTTGTGG TTCGTCCGGG GGAGAAGTAT AGACACACGA TGTTGTATGA GTTTTCAATT GAGTGATGTT
GTATGAGTGG CATATCAATG AGGTAGACAT CTTGTATTGC ATATTATGAT TTAGAAGCAA CTTTGGCTTC TGAAATTCCT
AGTTGTTTGC ATTCAAATAA TAATCACTTG TCTCAAGTTT GAATTCTCCA ATGTAAACTG TGCTGTTTTG CTCTCCTAAA
TATGGGTGAG ACCGTAGACT TTTTTTTGGT AAGTACAATG AGGTTGTTGT TTCATGAATT GTTGTCGAAG TTGAGAAACA
GTTTTCCTAA TACCTAGAAA CTTCAACCTA GACTGCATAA CAACACAATG TTCCTTATAT ATACACATAA GTGTGAGTAC
TTTCAATGAC AAGTCAAAAT CTCAA

>Vigan.11G225100.01
ATGTTATGTT GGATCTGTTC TTATATACGA GTTGTGTTAT TCAATCTGAT CACTTCAGTC ACCTTCATAC TCTTTTCCTC
TCTCTCTTCA ATTCCAATGG CGGATCAGAG CCCCAAACCA GAGACCTTCG AGCTCAGCAA TGGCAGCATG AAGATTCTCC
TCACCAATCT CGGATGCACC ATCATCTCCT TATCTGTTCC CGGAAAAGAT GGGGTGTTAT CCGACGTCGT TCTTGGCCTC
GACTCTGTTG AATCCTATGA GAAAGGTCTT TCTCCATATT TTGGCTGCAT TGTGGGTCGG GTTGCAAACC GAATCAAGGA
TGGCAAATTT ACACTTGATG GAGTTCAGTA CACTTTGCCT CTGAACAAAC CCCCAAACAG TCTCCATGGT GGAAATATTG
GGTTTGATAA GAGGGTATGG GAGGTAGTTG AACATAAAAA AGGAGAAACT CCTTCAATCA CTTTCAAGTA TCACAGTCAG
GATGGAGAAG AAGGTTATCC TGGGGATATC ACTGTTACAG CCACATACAC CCTCACCTCA AACACAACTC TGAGGCTTGA
CATGGAAGGA GTGCCAAAGG ACAAACCCAC CATAGTTAAC TTAGCTCAGC ACACCTACTG GAACTTAGCT GGTCACAACT
CAGGGAATGT ACTTGACCAT TCAATTCAGA TATGGGCTAA TAATATCACT CCTGTAGATG AGAATACTGT GCCAACAGGT
GAAATCATGG CAGTGAAGGG TACCCCTTTT GATTTTACAT CTGAGAAAAG AATAGGGAAC GATATTAGTG AAGTTGGATT
GGGATATGAC CACAATTTTG TGCTGGATTG TGGAGAAGAG AAAGATGGTT TGAGGCATGT TGCCAGAGTG AGGGATCCAT
CAAGTTCAAG AGTACTTAAC TTGTGGACAA CTGCCCCTGG TGTGCAATTT TACACTGGAA ACTATGTTAA TGGTGTTAAA
GGAAAAGGAG GTGCCATATA TGAAAAACAT GCAGGGTTAT GTCTGGAGAC ACAAGGATTC CCTAATGCTA TAAACCAACC
AAATTTTCCA TCTGTTGTGG TTCGTCCGGG GGAGAAGTAT AGACACACGA TGTTGTATGA GTTTTCAATT GAGTGA

>Vigan.11G225100.01
MLCWICSYIR VVLFNLITSV TFILFSSLSS IPMADQSPKP ETFELSNGSM KILLTNLGCT IISLSVPGKD GVLSDVVLGL
DSVESYEKGL SPYFGCIVGR VANRIKDGKF TLDGVQYTLP LNKPPNSLHG GNIGFDKRVW EVVEHKKGET PSITFKYHSQ
DGEEGYPGDI TVTATYTLTS NTTLRLDMEG VPKDKPTIVN LAQHTYWNLA GHNSGNVLDH SIQIWANNIT PVDENTVPTG
EIMAVKGTPF DFTSEKRIGN DISEVGLGYD HNFVLDCGEE KDGLRHVARV RDPSSSRVLN LWTTAPGVQF YTGNYVNGVK
GKGGAIYEKH AGLCLETQGF PNAINQPNFP SVVVRPGEKY RHTMLYEFSI E*