GBrowse Details

Vigan.11G225800.01

Basic Information:
Name: Vigan.11G225800.01
Multiple alignment
Variant Information
Position: Chr11:35217884..35222067 (- strand)
Length: 4184
Functional Information:
Description: Similar to auxin efflux carrier protein. [W6JLV0, Phaseolus angularis]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Auxin efflux carrier (IPR004776)
Auxin efflux carrier, plant type (IPR014024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.20,4.54,30.59,5.62,2.66,22.39,18.16,53.67
Arabidopsis thaliana homolog: AT1G23080.1, AT1G70940.1, AT1G73590.1, AT2G01420.2, AT5G57090.1
Automatic updates:
Name: NM_001280586 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin efflux carrier component 1-like (PIN5), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:35217884..35218326 (- strand)
Length: 443
Type: three_prime_UTR
Position: Chr11:35218327..35218393 (- strand)
Length: 67
Type: CDS
Position: Chr11:35218504..35218580 (- strand)
Length: 77
Type: CDS
Position: Chr11:35219038..35219195 (- strand)
Length: 158
Type: CDS
Position: Chr11:35219617..35219702 (- strand)
Length: 86
Type: CDS
Position: Chr11:35219810..35220056 (- strand)
Length: 247
Type: CDS
Position: Chr11:35220265..35221447 (- strand)
Length: 1183
Type: CDS
Position: Chr11:35221448..35222067 (- strand)
Length: 620
Type: five_prime_UTR


>Vigan.11G225800.01
GAAATATAGA AATTGGTGGA AATAGTATTG TATTTTGAAA GAAAGGGTTG ATAAAGAAAA GGTGGATCCA GAGAGAAAGA
GTTCCTTTAC AAAGCTTAAA GCAGAGAGCT GAAAAGAAGT ACTTGGAGAC ATCCCCACCC CAACCCAAAA TGCTTTTCCT
AAGCTTTTTG TGACAATTTT AGGACCCATA GAATAGAAGG TAGGGAGAGG CACACCCCCA CACAAGTTTC CAAACCCATC
AAATACCCTC AAACTCTTCT CAAAAACCAC ACTTGAAAAC AAAAAGCAAA ACAACAAACA AAGCCAACAA TACCCCCACA
CTTCCCACTC TGCATTCTGC TTTGGGGACT GCAAGTGCAA CCTTGCTGCT TGCTTGCAGC TCTCAAAGCT GAAAATATAT
TTCCTGTTTT CTGCTGCATA TTACCATACC ACCCACTCTC TCACTCCCCA AAAAACACAT GCTCTTCTTC CACTTCTCTA
TATATCTTTT CAATTTTCAT CATCATCACC ACCACCTCTA GCTCTCCAAA ACTTTCCCAC CTCATCAAAT CTTTCTTATA
TATTCTTCAT CTCTCTTTCC TCACTTCTTC TACCTTTCTC ACACACAACA CAACCACAAA ATGATCACCT TACTAGACTT
CTACCATGTC ATGACTGCAA TGGTGCCACT CTATGTGGCT ATGATACTAG CCTATGGCTC CGTTAAGTGG TGGAAGATTT
TCTCCCCTGA CCAATGTTCT GGCATCAACC GTTTTGTGGC ACTCTTTGCA GTGCCTCTTC TCTCCTTCCA CTTCATAGCA
TCAAACAACC CTTACAAGAT GAACCTTAGG TTCCTGGCTG CTGACACCCT TCAGAAGATC ATCATACTAA TCCTTCTTGC
CATCTGGAGC AACTTCACCA AAAGGGGTTG CTTGGAGTGG ACCATAACTT TGTTCTCCCT CTCCACCCTC CCCAACACCT
TGGTCATGGG CATCCCTTTG CTCAAAGGTA TGTATGGTGA GTTCTCTGGG AGCCTCATGG TTCAGATTGT GGTCCTTCAG
TGCATCATTT GGTACACCTT GATGCTGTTC ATGTTTGAGT TCAGGGGTGC CAGAATGCTT ATCTCTGAGC AGTTCCCTGA
CACTGCTGGC TCCATTGTCT CCATCCATGT CGACTCTGAT GTCATGTCAT TGGATGGACG GCAACCGCTT GAGACTGAAG
CTGAGATCAA AGAAGATGGG AAACTCCATG TCACTGTGAG GAAATCCAAT GCCTCAAGAT CAGACATCTT CTCTAGAAGG
TCTCAGGGTC TCTCTTCCAC CACTCCACGC CCTTCTAACC TCACAAATGC AGAGATATAC TCTTTGCAGT CTTCTAGGAA
CCCAACTCCA AGAGGCTCTA GCTTCAACCA CACTGACTTC TACTCCATGA TGGCTGCCGG TGGCAGAAAC TCCAACTTTG
GAGCCTCCGA TGTTTATGGT CTTTCCGCTT CAAGAGGGCC AACTCCAAGG CCTTCTAACT ACGATGAAGA TGGTGGAAAG
CCAAAGTTTC ATTACCATGC CGGTGGAACC GGACACTACC CTGCACCAAA CCCTGGCATG TTCTCTCCCT CTAATGGCTC
CAAAAGTGTT GCTGCTGCTA ATGCTAATGC TAATGCCAAG AAGCCTAATG GGCAGGCTCA GCTGAAGCCT GAGGATGGAA
ATAGGGACCT TCATATGTTT GTTTGGAGTT CAAGCGCTTC ACCGGTTTCT GATGTTTTTG GTGGCCATGA GTATGGAGGT
CATGATCAGA AAGAAGTCAA ATTGAATGTA TCTCCAGGAA AAGTGGAGAA TCATAGAGAC ACTCAGGAGG ACTACCTGGA
GAAAGATGAG TTCAGCTTTG GGAATAGAGG AATGGAGAGG GAGATGAATC AGCACGAGGG TGATAAAGTT GGAGATGGGA
AGCCAAAAAC CATGCCTCCT GCAAGTGTGA TGACAAGACT TATATTGATT ATGGTGTGGA GAAAACTCAT CAGAAACCCC
AACACCTACT CTAGTCTAAT TGGCCTCACT TGGTCTCTTG TTTCATTCAG GTGGAATGTT GAGATGCCTG CCATAATAGC
AAAGTCTATC TCCATATTGT CAGATGCAGG GCTTGGCATG GCCATGTTCA GTCTTGGTCT CTTCATGGCT TTGCAACCGA
GGATCATAGC ATGTGGAAAT TCCATAGCAG CTTTTGCCAT GGCTGTGAGA TTCCTTACAG GTCCAGCTGT CATGGCAGCT
GCTTCCATTG CTGTTGGACT CAAAGGTGTT CTCTTACACG TTGCCATTGT TCAGGCAGCT CTTCCGCAAG GAATTGTCCC
ATTTGTCTTT GCTAAGGAAT ATAATGTACA TCCTGATATT CTCAGCACAG CTGTTATTTT TGGGATGTTG ATTGCGTTGC
CCATAACTCT GGTGTACTAC ATTTTGATGG GGTTGTGAAT GGAAGAAATG ATGGATGATA CAGAAGATTC ACGTGTGCCA
TCATCATCAT CCATGCAATG CAAGATCAGT TTTTTGAGGC TTATTCAGCA TCAGAAAACA AAAGGGTCAC AGAAAAGCAT
TAGAAAAGCA TCACGAGAAT TGGATAGGAA GAACCCCAGG ATCAGTTTTT TTTTCTCTTT TTACTTTCTT TCTTTTGATT
TTGTATTTGT TTTCTTTTTG AATGAATTCT CCTTCCTTAG TGAAAATTAA TGTAAAATCA TGATGTAGCT AATTTACAAA
ATCATTGCCT CGTTAATTAT AATTTTATAT TATAATGTCC TCGGATTCCA TGTCGCTCAT CGAATGAAGA AAAAGTAGCA
AGCATGGCAA AACTTGGTTC ATTAAAATGC TAGTGCCATC ATCATTTTTT CCAATATAGT ATTAAACTTC CCATTGCTTT
T

>Vigan.11G225800.01
ATGATCACCT TACTAGACTT CTACCATGTC ATGACTGCAA TGGTGCCACT CTATGTGGCT ATGATACTAG CCTATGGCTC
CGTTAAGTGG TGGAAGATTT TCTCCCCTGA CCAATGTTCT GGCATCAACC GTTTTGTGGC ACTCTTTGCA GTGCCTCTTC
TCTCCTTCCA CTTCATAGCA TCAAACAACC CTTACAAGAT GAACCTTAGG TTCCTGGCTG CTGACACCCT TCAGAAGATC
ATCATACTAA TCCTTCTTGC CATCTGGAGC AACTTCACCA AAAGGGGTTG CTTGGAGTGG ACCATAACTT TGTTCTCCCT
CTCCACCCTC CCCAACACCT TGGTCATGGG CATCCCTTTG CTCAAAGGTA TGTATGGTGA GTTCTCTGGG AGCCTCATGG
TTCAGATTGT GGTCCTTCAG TGCATCATTT GGTACACCTT GATGCTGTTC ATGTTTGAGT TCAGGGGTGC CAGAATGCTT
ATCTCTGAGC AGTTCCCTGA CACTGCTGGC TCCATTGTCT CCATCCATGT CGACTCTGAT GTCATGTCAT TGGATGGACG
GCAACCGCTT GAGACTGAAG CTGAGATCAA AGAAGATGGG AAACTCCATG TCACTGTGAG GAAATCCAAT GCCTCAAGAT
CAGACATCTT CTCTAGAAGG TCTCAGGGTC TCTCTTCCAC CACTCCACGC CCTTCTAACC TCACAAATGC AGAGATATAC
TCTTTGCAGT CTTCTAGGAA CCCAACTCCA AGAGGCTCTA GCTTCAACCA CACTGACTTC TACTCCATGA TGGCTGCCGG
TGGCAGAAAC TCCAACTTTG GAGCCTCCGA TGTTTATGGT CTTTCCGCTT CAAGAGGGCC AACTCCAAGG CCTTCTAACT
ACGATGAAGA TGGTGGAAAG CCAAAGTTTC ATTACCATGC CGGTGGAACC GGACACTACC CTGCACCAAA CCCTGGCATG
TTCTCTCCCT CTAATGGCTC CAAAAGTGTT GCTGCTGCTA ATGCTAATGC TAATGCCAAG AAGCCTAATG GGCAGGCTCA
GCTGAAGCCT GAGGATGGAA ATAGGGACCT TCATATGTTT GTTTGGAGTT CAAGCGCTTC ACCGGTTTCT GATGTTTTTG
GTGGCCATGA GTATGGAGGT CATGATCAGA AAGAAGTCAA ATTGAATGTA TCTCCAGGAA AAGTGGAGAA TCATAGAGAC
ACTCAGGAGG ACTACCTGGA GAAAGATGAG TTCAGCTTTG GGAATAGAGG AATGGAGAGG GAGATGAATC AGCACGAGGG
TGATAAAGTT GGAGATGGGA AGCCAAAAAC CATGCCTCCT GCAAGTGTGA TGACAAGACT TATATTGATT ATGGTGTGGA
GAAAACTCAT CAGAAACCCC AACACCTACT CTAGTCTAAT TGGCCTCACT TGGTCTCTTG TTTCATTCAG GTGGAATGTT
GAGATGCCTG CCATAATAGC AAAGTCTATC TCCATATTGT CAGATGCAGG GCTTGGCATG GCCATGTTCA GTCTTGGTCT
CTTCATGGCT TTGCAACCGA GGATCATAGC ATGTGGAAAT TCCATAGCAG CTTTTGCCAT GGCTGTGAGA TTCCTTACAG
GTCCAGCTGT CATGGCAGCT GCTTCCATTG CTGTTGGACT CAAAGGTGTT CTCTTACACG TTGCCATTGT TCAGGCAGCT
CTTCCGCAAG GAATTGTCCC ATTTGTCTTT GCTAAGGAAT ATAATGTACA TCCTGATATT CTCAGCACAG CTGTTATTTT
TGGGATGTTG ATTGCGTTGC CCATAACTCT GGTGTACTAC ATTTTGATGG GGTTGTGA

>Vigan.11G225800.01
MITLLDFYHV MTAMVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA SNNPYKMNLR FLAADTLQKI
IILILLAIWS NFTKRGCLEW TITLFSLSTL PNTLVMGIPL LKGMYGEFSG SLMVQIVVLQ CIIWYTLMLF MFEFRGARML
ISEQFPDTAG SIVSIHVDSD VMSLDGRQPL ETEAEIKEDG KLHVTVRKSN ASRSDIFSRR SQGLSSTTPR PSNLTNAEIY
SLQSSRNPTP RGSSFNHTDF YSMMAAGGRN SNFGASDVYG LSASRGPTPR PSNYDEDGGK PKFHYHAGGT GHYPAPNPGM
FSPSNGSKSV AAANANANAK KPNGQAQLKP EDGNRDLHMF VWSSSASPVS DVFGGHEYGG HDQKEVKLNV SPGKVENHRD
TQEDYLEKDE FSFGNRGMER EMNQHEGDKV GDGKPKTMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLT WSLVSFRWNV
EMPAIIAKSI SILSDAGLGM AMFSLGLFMA LQPRIIACGN SIAAFAMAVR FLTGPAVMAA ASIAVGLKGV LLHVAIVQAA
LPQGIVPFVF AKEYNVHPDI LSTAVIFGML IALPITLVYY ILMGL*