GBrowse Details

Vigan.11G231700.01

Basic Information:
Name: Vigan.11G231700.01
Multiple alignment
Variant Information
Position: Chr11:35724639..35726213 (- strand)
Length: 1575
Functional Information:
Description: Similar to Reticulon-like protein. [V7C3I5, Phaseolus vulgaris]
InterPro: Reticulon (IPR003388)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.81,0.68,14.91,2.99,0.72,5.60,5.37,22.18
Arabidopsis thaliana homolog: AT3G18260.1
Automatic updates:
Name: NM_001248496 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527903 (LOC100527903), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:35724639..35724877 (- strand)
Length: 239
Type: three_prime_UTR
Position: Chr11:35724878..35725047 (- strand)
Length: 170
Type: CDS
Position: Chr11:35725323..35725392 (- strand)
Length: 70
Type: CDS
Position: Chr11:35725491..35725632 (- strand)
Length: 142
Type: CDS
Position: Chr11:35725757..35725937 (- strand)
Length: 181
Type: CDS
Position: Chr11:35726078..35726183 (- strand)
Length: 106
Type: CDS
Position: Chr11:35726184..35726213 (- strand)
Length: 30
Type: five_prime_UTR


>Vigan.11G231700.01
TCATGACACA ACATCAGTGA AGAAAAAACT ATGGCGAACG ATACATCATC TGATTCTGAT AATGAAATTA TCGGAGCACG
AGTAAAGCTC TTTGGACATG AAAAACCGAT ACATCAAGTT CTTGGAGGAG GAAAAGTGGC AGATATGCTG TTATGGAGGG
ACAGAAATTT ATCAGCTGCG CTTTTGGGAG GGATGACAGT GATATGGTTT CTATTTGAGA TTGTTGAATA CAATTTCGTG
ACTCTCCTTT GTCACATTTC CATCACCACC ATGCTTGTGC TATTCATATG GTCCACAGCT GCAGATATAT TCAAATGGAA
ACCTCCCCAG ATTCCAGACA TTATTTTACA AGAATCTTTC TTCCAAAGTC TTGCTTACAT TCTCCACAGA AGATTCAACC
AGTTACTACC AATGCTCCTC CATATTTCAT GTGGAATAGA CCTGCCAATC TTTCTTCTGA ACATTGTGTC CCTCTATATT
TTCTCAGTGA TTGGAAGCTA CTTCAGCTTT GTCAATCTGC TATATATTGG TTTCCTGTGC GTCCACACGC TGCCAATTGT
GTATGAACGA TATGAGGAAG AAATCAACAA TTGGGTGAGC GATATGATAA TCGTTCTCAG AAAAAACTAC AGGAGTTTTA
AGAAGAACTA CCTCAACAGA ATTCCCAGAG GACCAGTAAA GCCAAAGAAA ACCCAATAAA CTGTTACACT TACACTCATC
CCAACTTCAA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TTGTGCATTA CATAAATAGC
TGCTATGAGA GAAACAATGG TTATCACCAG AAAAACATAC ATAATATGTT TAAGTTTCTC CCCAAAAAAG CCATACAATG
TAATAATTTT ATTTTTCATA CATGTCCAAT TGTGTTATTC AATGGTGTTT TACATGGA

>Vigan.11G231700.01
ATGGCGAACG ATACATCATC TGATTCTGAT AATGAAATTA TCGGAGCACG AGTAAAGCTC TTTGGACATG AAAAACCGAT
ACATCAAGTT CTTGGAGGAG GAAAAGTGGC AGATATGCTG TTATGGAGGG ACAGAAATTT ATCAGCTGCG CTTTTGGGAG
GGATGACAGT GATATGGTTT CTATTTGAGA TTGTTGAATA CAATTTCGTG ACTCTCCTTT GTCACATTTC CATCACCACC
ATGCTTGTGC TATTCATATG GTCCACAGCT GCAGATATAT TCAAATGGAA ACCTCCCCAG ATTCCAGACA TTATTTTACA
AGAATCTTTC TTCCAAAGTC TTGCTTACAT TCTCCACAGA AGATTCAACC AGTTACTACC AATGCTCCTC CATATTTCAT
GTGGAATAGA CCTGCCAATC TTTCTTCTGA ACATTGTGTC CCTCTATATT TTCTCAGTGA TTGGAAGCTA CTTCAGCTTT
GTCAATCTGC TATATATTGG TTTCCTGTGC GTCCACACGC TGCCAATTGT GTATGAACGA TATGAGGAAG AAATCAACAA
TTGGGTGAGC GATATGATAA TCGTTCTCAG AAAAAACTAC AGGAGTTTTA AGAAGAACTA CCTCAACAGA ATTCCCAGAG
GACCAGTAAA GCCAAAGAAA ACCCAATAA

>Vigan.11G231700.01
MANDTSSDSD NEIIGARVKL FGHEKPIHQV LGGGKVADML LWRDRNLSAA LLGGMTVIWF LFEIVEYNFV TLLCHISITT
MLVLFIWSTA ADIFKWKPPQ IPDIILQESF FQSLAYILHR RFNQLLPMLL HISCGIDLPI FLLNIVSLYI FSVIGSYFSF
VNLLYIGFLC VHTLPIVYER YEEEINNWVS DMIIVLRKNY RSFKKNYLNR IPRGPVKPKK TQ*