GBrowse Details

Vigan.11G236300.01

Basic Information:
Name: Vigan.11G236300.01
Multiple alignment
Variant Information
Position: Chr11:36126130..36128248 (+ strand)
Length: 2119
Functional Information:
Description: Similar to Uncharacterized protein. [K7LEP5, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,4.92,1.16,0.10,0.00,0.04,8.76
Arabidopsis thaliana homolog: AT1G18400.1
Automatic updates:
Name: KT031256 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:36126130..36126458 (+ strand)
Length: 329
Type: five_prime_UTR
Position: Chr11:36126459..36126854 (+ strand)
Length: 396
Type: CDS
Position: Chr11:36126974..36127093 (+ strand)
Length: 120
Type: CDS
Position: Chr11:36127284..36127349 (+ strand)
Length: 66
Type: CDS
Position: Chr11:36127440..36127508 (+ strand)
Length: 69
Type: CDS
Position: Chr11:36127630..36127707 (+ strand)
Length: 78
Type: CDS
Position: Chr11:36127963..36128055 (+ strand)
Length: 93
Type: CDS
Position: Chr11:36128056..36128248 (+ strand)
Length: 193
Type: three_prime_UTR


>Vigan.11G236300.01
CCCACTAAAG AAGTGCACTT TTCAAATTCC CACTAGAGCT AAAAATTGAA ATTAAAAAGT CTAAAAGGTC CAAAACTAGG
CGTGCTTTTC TCACAAAAAC ATGGGTCCTT ATTGATATTG GACATTTTTC CCTGTGCAAG GGGCCAACTA AGGGAACAAA
AACTACAGAA GCTTGAGGTG CCACGTGGCC ACCTAAGAAT AGCTTCTATT CACCAATGTA GCCACAATTC CACAGTATAA
ATACAACAAG TGTAACCCAC ATTATCCAAA TACCACTTAA ACATCTCATA AACACTCACT CACTCTCTCA TTCTGTGATA
TATAATCACA TGGCTGAATT CTCAGAAAAT TTGCAACTTC AAAGCATTAG ACCCTCTTCT TTTCCATTCT TAGACATTGA
TCCAAGCATG GAACTCATAA ACCAATTCAT TGGGATCAAC CAACATGTCA TAGACAACTC AAACTTGACT ATGCACAACT
TGATGCCATT TTCCTGTGAC ACCTTCTTGG GCCCTCAAGA ACCTGAGTTT CCGGGAAACT TGGAGGAAAA TTTCCCTGCC
CTTGTTCATC ATGTCAACCA CAATGCACTT CCTGTTTCCC TCCCCATTTT CCAAGCAGAA AATGAGATCC ACGAAGGTAA
AAAGAGGAAA TCGGTGGATC TTCCAGAGAC CAGTTCAGCT AACTCAACTC CTGCAGTTTC TGAGACTGGA AGCAAGATAA
AACAAAGTTC TGGAAAAGGA AAGAGAGCAA AAAGCAATGT GACAGAAGAA GAGAAAGCAA AGGAAGTGGT CCATGTGAGA
GCCAGAAGAG GTCAAGCTAC CGATAGTCAC AGTTTAGCAG AAAGGGTGAG AAGAGGGAAA ATCAATGAGA AATTAAGGTG
CTTACAGAAT ATTGTTCCAG GATGTTACAA GACCATGGGT ATGGCAGTAA TGTTGGACGA AATCATAAAC TATGTGCAGT
CCCTGCAGCA TCAAGTAGAG TTCCTTTCTC TGAAGCTTAC TGCAGCAAGC ACCTTTTATG ACTTCAATTC CGAGACAGAT
GCTTTAGAAA CAATGCAGAG AGCAAGAGCA TCAGAGGCAA AAGAGTTAGG GAGGTATAAG AGAGAAGGGT ATGGAGGAGT
TTCTTGCTTT CAACCAAGTT GGCCACTTTG ACTTCAGTTT TGGACGTTTT AACTCAGCAG CCATACAAGA CATGAGATCA
CACTTCATCT GCTCTTTTAC TTTTACTTTC TACAAAGATC AATTTGTTTC CACTCTGTGC TGCTTGCACA AGTGGACATT
CTTGCTTGTA CAATCCTTCA GACATGTGTA GAAATCAAAT GGAAGTTAAT AAAAAGAAAA AAGC

>Vigan.11G236300.01
ATGGCTGAAT TCTCAGAAAA TTTGCAACTT CAAAGCATTA GACCCTCTTC TTTTCCATTC TTAGACATTG ATCCAAGCAT
GGAACTCATA AACCAATTCA TTGGGATCAA CCAACATGTC ATAGACAACT CAAACTTGAC TATGCACAAC TTGATGCCAT
TTTCCTGTGA CACCTTCTTG GGCCCTCAAG AACCTGAGTT TCCGGGAAAC TTGGAGGAAA ATTTCCCTGC CCTTGTTCAT
CATGTCAACC ACAATGCACT TCCTGTTTCC CTCCCCATTT TCCAAGCAGA AAATGAGATC CACGAAGGTA AAAAGAGGAA
ATCGGTGGAT CTTCCAGAGA CCAGTTCAGC TAACTCAACT CCTGCAGTTT CTGAGACTGG AAGCAAGATA AAACAAAGTT
CTGGAAAAGG AAAGAGAGCA AAAAGCAATG TGACAGAAGA AGAGAAAGCA AAGGAAGTGG TCCATGTGAG AGCCAGAAGA
GGTCAAGCTA CCGATAGTCA CAGTTTAGCA GAAAGGGTGA GAAGAGGGAA AATCAATGAG AAATTAAGGT GCTTACAGAA
TATTGTTCCA GGATGTTACA AGACCATGGG TATGGCAGTA ATGTTGGACG AAATCATAAA CTATGTGCAG TCCCTGCAGC
ATCAAGTAGA GTTCCTTTCT CTGAAGCTTA CTGCAGCAAG CACCTTTTAT GACTTCAATT CCGAGACAGA TGCTTTAGAA
ACAATGCAGA GAGCAAGAGC ATCAGAGGCA AAAGAGTTAG GGAGGTATAA GAGAGAAGGG TATGGAGGAG TTTCTTGCTT
TCAACCAAGT TGGCCACTTT GA

>Vigan.11G236300.01
MAEFSENLQL QSIRPSSFPF LDIDPSMELI NQFIGINQHV IDNSNLTMHN LMPFSCDTFL GPQEPEFPGN LEENFPALVH
HVNHNALPVS LPIFQAENEI HEGKKRKSVD LPETSSANST PAVSETGSKI KQSSGKGKRA KSNVTEEEKA KEVVHVRARR
GQATDSHSLA ERVRRGKINE KLRCLQNIVP GCYKTMGMAV MLDEIINYVQ SLQHQVEFLS LKLTAASTFY DFNSETDALE
TMQRARASEA KELGRYKREG YGGVSCFQPS WPL*