GBrowse Details

Vigan.11G238200.01

Basic Information:
Name: Vigan.11G238200.01
Multiple alignment
Variant Information
Position: Chr11:36252719..36256065 (+ strand)
Length: 3347
Functional Information:
Description: Similar to Uncharacterized protein. [I1M2R5, Glycine max]
GO: Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: membrane (GO:0016020)
InterPro: t-SNARE (IPR010989)
SNARE-complex protein Syntaxin-18 N-terminal (IPR019529)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.67,8.02,5.26,5.01,9.10,5.58,7.20,6.02
Arabidopsis thaliana homolog: AT1G51740.1
Automatic updates:
Name: NM_001252973 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max syntaxin-81-like (LOC100801587), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:36252719..36253012 (+ strand)
Length: 294
Type: five_prime_UTR
Position: Chr11:36253013..36253090 (+ strand)
Length: 78
Type: CDS
Position: Chr11:36253269..36253352 (+ strand)
Length: 84
Type: CDS
Position: Chr11:36253472..36253576 (+ strand)
Length: 105
Type: CDS
Position: Chr11:36254277..36254420 (+ strand)
Length: 144
Type: CDS
Position: Chr11:36254602..36254844 (+ strand)
Length: 243
Type: CDS
Position: Chr11:36254957..36255088 (+ strand)
Length: 132
Type: CDS
Position: Chr11:36255649..36255792 (+ strand)
Length: 144
Type: CDS
Position: Chr11:36255793..36256065 (+ strand)
Length: 273
Type: three_prime_UTR


>Vigan.11G238200.01
AAACGAATCG TTTAGATCTC ATAACAGCGT CGTCTTCGTC TTCGTCTTCT TTTCTTCTTC TTCTTCCTCC CTTTGTTTAG
GTTTCGCAGA GCTTCCTTCA GCGTCCTTCT CCGACCCATT TACCTGTATT TCACTCTTTC AACCACAACT ACACCATACA
ATCCTTCCAA TTTTGAAATT GGAACTCGTT GAATCGTATT GTATCGTATC GTATCCTATC ATCATATCGC GTCGCACGAT
ATCTCGGTTC CTTTGCTTCT TTCTGAATTC CCATTGATCG ATCGCAATTG AGAGATGGTA AAAGCGAGGG ACAGAACCGA
GGATTTCAAA GATACCGTGC GCCGCACCGC TCACTCTTTG GGCTACGACG AGGCTAAAGT AGCGTCTATT ATGGCATCTT
TCATCATCCA TAAACCGCCA CAAAGGTCTC CGTTTTCCAA AGCCGCATTG AAGACGCTGG AGAGTATTGG AGAGCTGGAT
CAGTTTTTGT TGAAGCATAG AAAGGACTAT ACGGATCTGC ATCGCACCAC AGAAAAGGAA AGAGATAGCA TCGAGCATGA
AGTTAGTACT TTTATTAAAA CATGCCAGGA ACAAATTGAT ATTCTTAAGA ATAGTATAAA TCAAGAAGAG GAAACTTCCA
AAGGTTGGCT TGGCATTGCG ACTACAAAAT CTAATGCCGA CGTGATTGCC CACAAACATG GGGTGGTTCT AATTTTAAGT
GAGAGACTCC ATACAGTCAC TGCACAGTTT GATCAGCTAA GAGCTGTACG CTTCCAGGAT GCTATTAATA AAGCAATACC
ACGGAGAAAA CTTAACCGTG TAACCAGAAA AGATTCTGCA GAAACCTCAA AACCAGATGG CATGGACCTC AGAGAACCTG
AAGAGTTACG TGCTGAGCCT CTACGAGTTC AGCAACAACT CTTGGACGAT GAAACACGTG CCCTGCAGGT GGAATTGACT
AATCTTCTCG ATACAGTTCA AGAAACCGAA ACTAAGATGG TGGAAATGTC TGCACTAAAT CACCTCATGT CTACTCATGT
TTTGCAGCAA GCTCAGCAAA TTGAGCATCT TTATGAGCAG GCTATTGAAG CCACTAAGAA TGTTGAGCTC GGTAACAAAG
AACTCTCACA AGCCATTCAG CGGAATAGCA GCAGCAGGAC ATTTCTTTTA CTGTTTCTAT TTGTGCTTAC TTTTTCAATC
CTCTTTCTTG ATTGGTATAG TTAAATGCAT TTTGTTTTCT GCTAGCACAG TGAATCTTCT TATAGAAACT CTGCCCTCTC
TCGCTTTTCC CTATTGCTGT CAATATCTGT TTTTACCCCA AGGAAGGCAT CTTTTTCTAG ATGCAATGTA TTTGGTTATT
GGAGAAATAA TTTTAGTGAT CAATTTATGA AGGGAATTAC AAAAGGAGAC CTCCCTACTG TTTTGTAGGA AGAGAGAGAA
TGATGAATAT TTTATTTGGT TTGTAAATTT GAAGAGATAA AAGGAAAGTG AGGGACA

>Vigan.11G238200.01
ATGGTAAAAG CGAGGGACAG AACCGAGGAT TTCAAAGATA CCGTGCGCCG CACCGCTCAC TCTTTGGGCT ACGACGAGGC
TAAAGTAGCG TCTATTATGG CATCTTTCAT CATCCATAAA CCGCCACAAA GGTCTCCGTT TTCCAAAGCC GCATTGAAGA
CGCTGGAGAG TATTGGAGAG CTGGATCAGT TTTTGTTGAA GCATAGAAAG GACTATACGG ATCTGCATCG CACCACAGAA
AAGGAAAGAG ATAGCATCGA GCATGAAGTT AGTACTTTTA TTAAAACATG CCAGGAACAA ATTGATATTC TTAAGAATAG
TATAAATCAA GAAGAGGAAA CTTCCAAAGG TTGGCTTGGC ATTGCGACTA CAAAATCTAA TGCCGACGTG ATTGCCCACA
AACATGGGGT GGTTCTAATT TTAAGTGAGA GACTCCATAC AGTCACTGCA CAGTTTGATC AGCTAAGAGC TGTACGCTTC
CAGGATGCTA TTAATAAAGC AATACCACGG AGAAAACTTA ACCGTGTAAC CAGAAAAGAT TCTGCAGAAA CCTCAAAACC
AGATGGCATG GACCTCAGAG AACCTGAAGA GTTACGTGCT GAGCCTCTAC GAGTTCAGCA ACAACTCTTG GACGATGAAA
CACGTGCCCT GCAGGTGGAA TTGACTAATC TTCTCGATAC AGTTCAAGAA ACCGAAACTA AGATGGTGGA AATGTCTGCA
CTAAATCACC TCATGTCTAC TCATGTTTTG CAGCAAGCTC AGCAAATTGA GCATCTTTAT GAGCAGGCTA TTGAAGCCAC
TAAGAATGTT GAGCTCGGTA ACAAAGAACT CTCACAAGCC ATTCAGCGGA ATAGCAGCAG CAGGACATTT CTTTTACTGT
TTCTATTTGT GCTTACTTTT TCAATCCTCT TTCTTGATTG GTATAGTTAA 

>Vigan.11G238200.01
MVKARDRTED FKDTVRRTAH SLGYDEAKVA SIMASFIIHK PPQRSPFSKA ALKTLESIGE LDQFLLKHRK DYTDLHRTTE
KERDSIEHEV STFIKTCQEQ IDILKNSINQ EEETSKGWLG IATTKSNADV IAHKHGVVLI LSERLHTVTA QFDQLRAVRF
QDAINKAIPR RKLNRVTRKD SAETSKPDGM DLREPEELRA EPLRVQQQLL DDETRALQVE LTNLLDTVQE TETKMVEMSA
LNHLMSTHVL QQAQQIEHLY EQAIEATKNV ELGNKELSQA IQRNSSSRTF LLLFLFVLTF SILFLDWYS*