GBrowse Details

Vigan.11G241200.01

Basic Information:
Name: Vigan.11G241200.01
Multiple alignment
Variant Information
Position: Chr11:36503195..36505854 (- strand)
Length: 2660
Functional Information:
Description: Similar to ATP-dependent Clp protease adapter protein ClpS-like. [XP_004157424.1, Cucumis sativus]
GO: Biological Process: protein catabolic process (GO:0030163)
InterPro: Adaptor protein ClpS, core (IPR003769)
Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (IPR014719)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.09,4.24,168.44,1.05,3.86,0.31,13.07
Arabidopsis thaliana homolog: AT1G68660.1
Automatic updates:
Name: NM_001250882 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ATP-dependent Clp protease adapter protein CLPS1, chloroplastic (LOC100306117), mRNA; nuclear gene for chloroplast product.
PubMed ID: 23898032 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:36503195..36503850 (- strand)
Length: 656
Type: three_prime_UTR
Position: Chr11:36503851..36504115 (- strand)
Length: 265
Type: CDS
Position: Chr11:36505279..36505429 (- strand)
Length: 151
Type: CDS
Position: Chr11:36505565..36505631 (- strand)
Length: 67
Type: CDS
Position: Chr11:36505632..36505854 (- strand)
Length: 223
Type: five_prime_UTR


>Vigan.11G241200.01
AATAACCTCA AAAAATTGGG ATCTACACGT GTCACCATAT TAACGTGTAA AACCCAATTC AGTTTGCACC TTACAAAATT
CTCTTGACCA ATTTTTATAC CCAAAAAAAT CAGTGAGCTA ACGACAAAGA CAACATTGGA TTACTTATCT CACATTATTG
CTACCCTCTT ATTGTTACAG GAGCTGTCTG CTAAGTGTCA ACAAAGAGAC TCAAAGAGCA GCAATGGAGG CTGCATTAAG
CACTGCACTT GCTCTTTCAC CTAACCAACT ATTCAATGCA GTAAATCCTG GAGATAAAAA TTTTGCTTTG AAATATTGCA
AAGATCGTAG TGTTGTAATG ACAATGGCAG CCACTGGAAT ATTAGGAAAA GGTGGAGGGT TGATTGAGAG GCCAACCATA
GAGACAACAA CACCTGGAAG GGAATCCGAA TTTGACGTAA GGAAATCGCG GAAAACATCT CCACCATTCC GAGTTTTGCT
GCATAATGAC AACTTCAACA AGAGAGAATA TGTTGTGCAA GTGCTGATGA AGGTGATACC TGGAATGACA ATTGATAATG
CAGTTAACAT CATGCAGGAA GCACATCATA ATGGATTAGC AGTGGTGATC ACATGTGCTC AAGTGGATGC TGAAGACCAC
TGCATGCAGT TGAGAGGAAA CGGCCTTTTA AGCTCAATTG AGCCAGCTGA TGGTGGTGGT TGCTGATAGA AAAACAGATC
ATTTCCATAG CCTAGTACTT TCTTACAAAT TACTCAGTTC CATAATGTTC TTCTTTCCAA TTCCAACCAT TAAACATGTC
TGTATAGAAA AATAATGACT AGTGTCTTTA TATAAGCAAT AGCCAGAACA GAACATAAAA TTTGGATGAA GATGGTTGGT
TGAAAGTAAA AATTGAAGCA CCAATTGATT ACATAGAATG CTGCATACCT AAAAGAATAA ATACTACAGA GAATGAGCTT
TAAATGGCAG TGTTTGTTAG TGTCTTCAAA AGCATTTTAA CTATTCTAGT TTGCAGCATT AAAAACAAAC AGATATGACT
GATATGTTCA TCAGCACAGC ATTGGTTGCT TCCCCAAAGT TTAAATGCAG GTTGGTTGCA ATCTTTGTTC CAGTAAGCAA
TGAAACGTGA AAATGTGATC ATAGCTAGGA AAAAGAAAGT CTAGGAAACA AGAATAGCAA TGACACTGAC ATGCTTTTAT
GACCAATGCA ACAACCTCAA CAACCAAGAC ACATTTAAGG AATACATAAA TTTGATGTCT TTGAGATAGT ACAGTGTCTC
TTGGTGCTTT GACATTACAG CTCTACTTAC TGCTGAAAAA CTTGGATTGG AAATGTTGTA TCTATGCAGT TTGACTTTGA
TC

>Vigan.11G241200.01
ATGGAGGCTG CATTAAGCAC TGCACTTGCT CTTTCACCTA ACCAACTATT CAATGCAGTA AATCCTGGAG ATAAAAATTT
TGCTTTGAAA TATTGCAAAG ATCGTAGTGT TGTAATGACA ATGGCAGCCA CTGGAATATT AGGAAAAGGT GGAGGGTTGA
TTGAGAGGCC AACCATAGAG ACAACAACAC CTGGAAGGGA ATCCGAATTT GACGTAAGGA AATCGCGGAA AACATCTCCA
CCATTCCGAG TTTTGCTGCA TAATGACAAC TTCAACAAGA GAGAATATGT TGTGCAAGTG CTGATGAAGG TGATACCTGG
AATGACAATT GATAATGCAG TTAACATCAT GCAGGAAGCA CATCATAATG GATTAGCAGT GGTGATCACA TGTGCTCAAG
TGGATGCTGA AGACCACTGC ATGCAGTTGA GAGGAAACGG CCTTTTAAGC TCAATTGAGC CAGCTGATGG TGGTGGTTGC
TGA

>Vigan.11G241200.01
MEAALSTALA LSPNQLFNAV NPGDKNFALK YCKDRSVVMT MAATGILGKG GGLIERPTIE TTTPGRESEF DVRKSRKTSP
PFRVLLHNDN FNKREYVVQV LMKVIPGMTI DNAVNIMQEA HHNGLAVVIT CAQVDAEDHC MQLRGNGLLS SIEPADGGGC
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